Literature DB >> 35838826

Epigenetics as "conductor" in "orchestra" of pluripotent states.

Ishita Baral1,2, Pallavi Chinnu Varghese1,2, Debasree Dutta3.   

Abstract

Pluripotent character is described as the potency of cells to differentiate into all three germ layers. The best example to reinstate the term lies in the context of embryonic stem cells (ESCs). Pluripotent ESC describes the in vitro status of those cells that originate during the complex process of embryogenesis. Pre-implantation to post-implantation development of embryo embrace cells with different levels of stemness. Currently, four states of pluripotency have been recognized, in the progressing order of "naïve," "poised," "formative," and "primed." Epigenetics act as the "conductor" in this "orchestra" of transition in pluripotent states. With a distinguishable gene expression profile, these four states associate with different epigenetic signatures, sometimes distinct while otherwise overlapping. The present review focuses on how epigenetic factors, including DNA methylation, bivalent chromatin, chromatin remodelers, chromatin/nuclear architecture, and microRNA, could dictate pluripotent states and their transition among themselves.
© 2022. The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature.

Entities:  

Keywords:  Epigenetics; Formative; Naïve; Pluripotent states; Poised; Primed

Year:  2022        PMID: 35838826     DOI: 10.1007/s00441-022-03667-0

Source DB:  PubMed          Journal:  Cell Tissue Res        ISSN: 0302-766X            Impact factor:   4.051


  150 in total

Review 1.  Exploring long non-coding RNAs through sequencing.

Authors:  Sophie R Atkinson; Samuel Marguerat; Jürg Bähler
Journal:  Semin Cell Dev Biol       Date:  2011-12-20       Impact factor: 7.727

2.  A bivalent chromatin structure marks key developmental genes in embryonic stem cells.

Authors:  Bradley E Bernstein; Tarjei S Mikkelsen; Xiaohui Xie; Michael Kamal; Dana J Huebert; James Cuff; Ben Fry; Alex Meissner; Marius Wernig; Kathrin Plath; Rudolf Jaenisch; Alexandre Wagschal; Robert Feil; Stuart L Schreiber; Eric S Lander
Journal:  Cell       Date:  2006-04-21       Impact factor: 41.582

Review 3.  Chromatin dynamics during cellular reprogramming.

Authors:  Effie Apostolou; Konrad Hochedlinger
Journal:  Nature       Date:  2013-10-24       Impact factor: 49.962

4.  Large-Scale Analysis of Loss of Imprinting in Human Pluripotent Stem Cells.

Authors:  Shiran Bar; Maya Schachter; Talia Eldar-Geva; Nissim Benvenisty
Journal:  Cell Rep       Date:  2017-05-02       Impact factor: 9.423

5.  Characterizing the Genetic Stability of Human Naïve and Primed Pluripotent Stem Cells.

Authors:  Duncan Baker; Ivana Barbaric
Journal:  Methods Mol Biol       Date:  2022

6.  m6A RNA Immunoprecipitation Followed by High-Throughput Sequencing to Map N6-Methyladenosine.

Authors:  Devi Prasad Bhattarai; Francesca Aguilo
Journal:  Methods Mol Biol       Date:  2022

7.  Strand-specific RNA sequencing in Plasmodium falciparum malaria identifies developmentally regulated long non-coding RNA and circular RNA.

Authors:  Kate M Broadbent; Jill C Broadbent; Ulf Ribacke; Dyann Wirth; John L Rinn; Pardis C Sabeti
Journal:  BMC Genomics       Date:  2015-06-13       Impact factor: 3.969

8.  Ontogeny of CpG island methylation and specificity of DNMT3 methyltransferases during embryonic development in the mouse.

Authors:  Ghislain Auclair; Sylvain Guibert; Ambre Bender; Michael Weber
Journal:  Genome Biol       Date:  2014       Impact factor: 13.583

9.  Wnt Inhibition Facilitates RNA-Mediated Reprogramming of Human Somatic Cells to Naive Pluripotency.

Authors:  Nicholas Bredenkamp; Jian Yang; James Clarke; Giuliano Giuseppe Stirparo; Ferdinand von Meyenn; Sabine Dietmann; Duncan Baker; Rosalind Drummond; Yongming Ren; Dongwei Li; Chuman Wu; Maria Rostovskaya; Sarah Eminli-Meissner; Austin Smith; Ge Guo
Journal:  Stem Cell Reports       Date:  2019-11-07       Impact factor: 7.765

10.  The SMAD2/3 interactome reveals that TGFβ controls m6A mRNA methylation in pluripotency.

Authors:  Alessandro Bertero; Stephanie Brown; Pedro Madrigal; Anna Osnato; Daniel Ortmann; Loukia Yiangou; Juned Kadiwala; Nina C Hubner; Igor Ruiz de Los Mozos; Christoph Sadée; An-Sofie Lenaerts; Shota Nakanoh; Rodrigo Grandy; Edward Farnell; Jernej Ule; Hendrik G Stunnenberg; Sasha Mendjan; Ludovic Vallier
Journal:  Nature       Date:  2018-02-28       Impact factor: 49.962

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