Literature DB >> 3006044

Gyration is required for 5S RNA transcription from a chromatin template.

E B Kmiec, M Ryoji, A Worcel.   

Abstract

We have assembled transcriptionally active chromatin on 5S DNA plasmids by using a Xenopus oocyte supernatant and the 5S-specific transcription factor IIIA (TFIIIA). In this system, the 5S RNA gene is accurately transcribed at a rapid rate of 50 transcripts per gene per hr. By following the time course of RNA synthesis during chromatin assembly, the dose response to TFIIIA addition, and the effect of novobiocin on the assembled nucleoprotein, we show that there is a strict correlation between transcriptional activity and the generation of torsionally strained DNA supercoils in "dynamic chromatin." Transcription cannot be the cause of the dynamic structure, because the assembly of this chromatin is unaffected by alpha-amanitin levels that completely block RNA polymerase III. Surprisingly, the dynamic chromatin remains transcriptionally active after relaxation with DNA topoisomerase I, which implies that the essential parameter for chromatin transcription is gyration per se, and not its effect on DNA topology.

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Year:  1986        PMID: 3006044      PMCID: PMC323064          DOI: 10.1073/pnas.83.5.1305

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  23 in total

1.  DNA gyrase: an enzyme that introduces superhelical turns into DNA.

Authors:  M Gellert; K Mizuuchi; M H O'Dea; H A Nash
Journal:  Proc Natl Acad Sci U S A       Date:  1976-11       Impact factor: 11.205

2.  Chromosomal subunits in active genes have an altered conformation.

Authors:  H Weintraub; M Groudine
Journal:  Science       Date:  1976-09-03       Impact factor: 47.728

3.  Structure of the two distinct types of minichromosomes that are assembled on DNA injected in Xenopus oocytes.

Authors:  M Ryoji; A Worcel
Journal:  Cell       Date:  1985-04       Impact factor: 41.582

4.  Multiple forms of deoxyribonucleic acid-dependent ribonucleic acid polymerase in Xenopus laevis. Isolation and partial characterization.

Authors:  R G Roeder
Journal:  J Biol Chem       Date:  1974-01-10       Impact factor: 5.157

5.  Specific interaction of a purified transcription factor with an internal control region of 5S RNA genes.

Authors:  D R Engelke; S Y Ng; B S Shastry; R G Roeder
Journal:  Cell       Date:  1980-03       Impact factor: 41.582

6.  The positive transcription factor of the 5S RNA gene induces a 5S DNA-specific gyration in Xenopus oocyte extracts.

Authors:  E B Kmiec; A Worcel
Journal:  Cell       Date:  1985-07       Impact factor: 41.582

7.  A homogeneous type II DNA topoisomerase from HeLa cell nuclei.

Authors:  K G Miller; L F Liu; P T Englund
Journal:  J Biol Chem       Date:  1981-09-10       Impact factor: 5.157

8.  Stable transcription complexes of Xenopus 5S RNA genes: a means to maintain the differentiated state.

Authors:  D F Bogenhagen; W M Wormington; D D Brown
Journal:  Cell       Date:  1982-02       Impact factor: 41.582

9.  ATP-dependent DNA topoisonmerase from D. melanogaster reversibly catenates duplex DNA rings.

Authors:  T Hsieh; D Brutlag
Journal:  Cell       Date:  1980-08       Impact factor: 41.582

10.  Purification and characterization of Xenopus laevis topoisomerase II.

Authors:  P Benedetti; M I Baldi; E Mattoccia; G P Tocchini-Valentini
Journal:  EMBO J       Date:  1983       Impact factor: 11.598

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  17 in total

1.  Upstream activation sequence-dependent alteration of chromatin structure and transcription activation of the yeast GAL1-GAL10 genes.

Authors:  M J Fedor; R D Kornberg
Journal:  Mol Cell Biol       Date:  1989-04       Impact factor: 4.272

2.  Localized torsional tension in the DNA of human cells.

Authors:  M Ljungman; P C Hanawalt
Journal:  Proc Natl Acad Sci U S A       Date:  1992-07-01       Impact factor: 11.205

3.  Mitochondrial DNA structure and expression in specialized subtypes of mammalian striated muscle.

Authors:  B H Annex; R S Williams
Journal:  Mol Cell Biol       Date:  1990-11       Impact factor: 4.272

4.  Gamma rays and bleomycin nick DNA and reverse the DNase I sensitivity of beta-globin gene chromatin in vivo.

Authors:  B Villeponteau; H G Martinson
Journal:  Mol Cell Biol       Date:  1987-05       Impact factor: 4.272

5.  The effect of novobiocin on yeast topoisomerase type II.

Authors:  M J Pocklington; J R Jenkins; E Orr
Journal:  Mol Gen Genet       Date:  1990-01

6.  Pathways of nucleoprotein assembly on 5S RNA genes in a Xenopus oocyte S-150 extract.

Authors:  M A Razik; J Blanco; J M Gottesfeld
Journal:  Nucleic Acids Res       Date:  1989-06-12       Impact factor: 16.971

7.  Effects of DNA supercoiling on the topological properties of nucleosomes.

Authors:  M M Garner; G Felsenfeld; M H O'Dea; M Gellert
Journal:  Proc Natl Acad Sci U S A       Date:  1987-05       Impact factor: 11.205

8.  Reaction parameters of TFIIIA-induced supercoiling catalyzed by a Xenopus laevis cell-free extract.

Authors:  J A Sekiguchi; E B Kmiec
Journal:  Nucleic Acids Res       Date:  1990-02-25       Impact factor: 16.971

9.  Characterization of the repressed 5S DNA minichromosomes assembled in vitro with a high-speed supernatant of Xenopus laevis oocytes.

Authors:  A Shimamura; D Tremethick; A Worcel
Journal:  Mol Cell Biol       Date:  1988-10       Impact factor: 4.272

10.  Transcription of adenovirus 2 major late and peptide IX genes under conditions of in vitro nucleosome assembly.

Authors:  T Matsui
Journal:  Mol Cell Biol       Date:  1987-04       Impact factor: 4.272

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