Literature DB >> 3033656

Effects of DNA supercoiling on the topological properties of nucleosomes.

M M Garner, G Felsenfeld, M H O'Dea, M Gellert.   

Abstract

In the nucleosome core particle, at least 145 base pairs of DNA are bound to the histone octamer in a superhelical conformation. We have asked what effect the presence of these particles has on the ability of DNA gyrase to supercoil DNA. Synthetic minichromosomes, constructed by reconstituting complexes of core histones with the closed circular plasmid pBR322, were treated with various amounts of DNA gyrase. We have found that the maximum level of supercoiling that is attainable is nearly identical for protein-free plasmids and for plasmids half-saturated with core histones, even though supercoiling does not result in a loss of histones from the complex. It appears that, at sufficiently high levels of supercoiling, the core particle is disrupted in such a way that the DNA bound to histones is no longer constrained.

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Year:  1987        PMID: 3033656      PMCID: PMC304709          DOI: 10.1073/pnas.84.9.2620

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  17 in total

1.  Folding of the DNA double helix in chromatin-like structures from simian virus 40.

Authors:  J E Germond; B Hirt; P Oudet; M Gross-Bellark; P Chambon
Journal:  Proc Natl Acad Sci U S A       Date:  1975-05       Impact factor: 11.205

2.  DNA gyrase: an enzyme that introduces superhelical turns into DNA.

Authors:  M Gellert; K Mizuuchi; M H O'Dea; H A Nash
Journal:  Proc Natl Acad Sci U S A       Date:  1976-11       Impact factor: 11.205

3.  The organization of histones and DNA in chromatin: evidence for an arginine-rich histone kernel.

Authors:  R D Camerini-Otero; B Sollner-Webb; G Felsenfeld
Journal:  Cell       Date:  1976-07       Impact factor: 41.582

4.  Structure of nucleosome core particles of chromatin.

Authors:  J T Finch; L C Lutter; D Rhodes; R S Brown; B Rushton; M Levitt; A Klug
Journal:  Nature       Date:  1977-09-01       Impact factor: 49.962

5.  DNA folding by histones: the kinetics of chromatin core particle reassembly and the interaction of nucleosomes with histones.

Authors:  A Stein
Journal:  J Mol Biol       Date:  1979-05-15       Impact factor: 5.469

6.  Thermal denaturation of nucleosomal core particles.

Authors:  W O Weischet; K Tatchell; K E Van Holde; H Klump
Journal:  Nucleic Acids Res       Date:  1978-01       Impact factor: 16.971

7.  A new procedure for purifying histone pairs H2A + H2B and H3 + H4 from chromatin using hydroxylapatite.

Authors:  R H Simon; G Felsenfeld
Journal:  Nucleic Acids Res       Date:  1979-02       Impact factor: 16.971

8.  The number of charge-charge interactions stabilizing the ends of nucleosome DNA.

Authors:  J D McGhee; G Felsenfeld
Journal:  Nucleic Acids Res       Date:  1980-06-25       Impact factor: 16.971

9.  H5 Histone and DNA-relaxing enzyme of chicken erythrocytes. Interaction with superhelical DNA.

Authors:  M Bina-Stein; T Vogel; D S Singer; M F Singer
Journal:  J Biol Chem       Date:  1976-12-10       Impact factor: 5.157

10.  Mechanism of a reversible, thermally induced conformational change in chromatin core particles.

Authors:  R T Simpson
Journal:  J Biol Chem       Date:  1979-10-25       Impact factor: 5.157

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  20 in total

1.  Development of a heat shock inducible expression cassette for plants: characterization of parameters for its use in transient expression assays.

Authors:  W M Ainley; J L Key
Journal:  Plant Mol Biol       Date:  1990-06       Impact factor: 4.076

2.  Chromatin structure can strongly facilitate enhancer action over a distance.

Authors:  Mikhail A Rubtsov; Yury S Polikanov; Vladimir A Bondarenko; Yuh-Hwa Wang; Vasily M Studitsky
Journal:  Proc Natl Acad Sci U S A       Date:  2006-11-13       Impact factor: 11.205

Review 3.  Biochemical analysis of enhancer-promoter communication in chromatin.

Authors:  Yury S Polikanov; Mikhail A Rubtsov; Vasily M Studitsky
Journal:  Methods       Date:  2007-03       Impact factor: 3.608

4.  Evidence for torsional stress in transcriptionally activated chromatin.

Authors:  M W Leonard; R K Patient
Journal:  Mol Cell Biol       Date:  1991-12       Impact factor: 4.272

5.  Active beta-globin gene transcription occurs in methylated, DNase I-resistant chromatin of nonerythroid chicken cells.

Authors:  R Lois; L Freeman; B Villeponteau; H G Martinson
Journal:  Mol Cell Biol       Date:  1990-01       Impact factor: 4.272

6.  Nucleosome positioning as a critical determinant for the DNA cleavage sites of mammalian DNA topoisomerase II in reconstituted simian virus 40 chromatin.

Authors:  G Capranico; C Jaxel; M Roberge; K W Kohn; Y Pommier
Journal:  Nucleic Acids Res       Date:  1990-08-11       Impact factor: 16.971

7.  Large scale preparation of positively supercoiled DNA using the archaeal histone HMf.

Authors:  W A LaMarr; K M Sandman; J N Reeve; P C Dedon
Journal:  Nucleic Acids Res       Date:  1997-04-15       Impact factor: 16.971

8.  DNA superhelicity enhances the assembly of transcriptionally active chromatin in vitro.

Authors:  J M Sekiguchi; E B Kmiec
Journal:  Mol Gen Genet       Date:  1989-12

9.  Dependence of the linking deficiency of supercoiled minichromosomes upon nucleosome distortion.

Authors:  J H White; R Gallo; W R Bauer
Journal:  Nucleic Acids Res       Date:  1989-07-25       Impact factor: 16.971

10.  Altered histone H1 stoichiometry and an absence of nucleosome positioning on transfected DNA.

Authors:  Pratibha B Hebbar; Trevor K Archer
Journal:  J Biol Chem       Date:  2007-12-22       Impact factor: 5.157

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