Literature DB >> 2657404

Upstream activation sequence-dependent alteration of chromatin structure and transcription activation of the yeast GAL1-GAL10 genes.

M J Fedor1, R D Kornberg.   

Abstract

Conversion of the positioned nucleosome array characteristic of the repressed GAL1-GAL10 promoter region to the more accessible conformation of the induced state was found to depend on the upstream activation sequence, GAL4 protein, a positive regulator of transcription, and galactose, the inducing agent. The effect of the GAL4 protein-upstream activation sequence complex on the structure of adjacent chromatin required no other promoter sequences. Although sequences protected by histones in the repressed state became more accessible to micrococcal nuclease and (methidiumpropyl-EDTA)iron(II) cleavage following induction of transcription, DNA-protein particles containing these sequences retained the electrophoretic mobility of nucleosomes, indicating that the promoter region can be associated with nucleosomes under conditions of transcription activation.

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Year:  1989        PMID: 2657404      PMCID: PMC362591          DOI: 10.1128/mcb.9.4.1721-1732.1989

Source DB:  PubMed          Journal:  Mol Cell Biol        ISSN: 0270-7306            Impact factor:   4.272


  72 in total

1.  Photofootprinting in vivo detects transcription-dependent changes in yeast TATA boxes.

Authors:  S B Selleck; J Majors
Journal:  Nature       Date:  1987 Jan 8-14       Impact factor: 49.962

Review 2.  Core particle, fiber, and transcriptionally active chromatin structure.

Authors:  D S Pederson; F Thoma; R T Simpson
Journal:  Annu Rev Cell Biol       Date:  1986

3.  Nucleosomes inhibit the initiation of transcription but allow chain elongation with the displacement of histones.

Authors:  Y Lorch; J W LaPointe; R D Kornberg
Journal:  Cell       Date:  1987-04-24       Impact factor: 41.582

4.  The regulatory protein GAL80 is a determinant of the chromatin structure of the yeast GAL1-10 control region.

Authors:  D Lohr; T Torchia; J Hopper
Journal:  J Biol Chem       Date:  1987-11-15       Impact factor: 5.157

Review 5.  A model fungal gene regulatory mechanism: the GAL genes of Saccharomyces cerevisiae.

Authors:  M Johnston
Journal:  Microbiol Rev       Date:  1987-12

6.  Topological characterization of the simian virus 40 transcription complex.

Authors:  B Petryniak; L C Lutter
Journal:  Cell       Date:  1987-01-30       Impact factor: 41.582

7.  A DNA fragment containing the upstream activator sequence determines nucleosome positioning of the transcriptionally repressed PHO5 gene of Saccharomyces cerevisiae.

Authors:  L W Bergman
Journal:  Mol Cell Biol       Date:  1986-07       Impact factor: 4.272

8.  Structure of the transcriptionally repressed phosphate-repressible acid phosphatase gene (PHO5) of Saccharomyces cerevisiae.

Authors:  L W Bergman; M C Stranathan; L H Preis
Journal:  Mol Cell Biol       Date:  1986-01       Impact factor: 4.272

9.  Protein-DNA interactions and nuclease-sensitive regions determine nucleosome positions on yeast plasmid chromatin.

Authors:  F Thoma
Journal:  J Mol Biol       Date:  1986-07-20       Impact factor: 5.469

10.  Removal of positioned nucleosomes from the yeast PHO5 promoter upon PHO5 induction releases additional upstream activating DNA elements.

Authors:  A Almer; H Rudolph; A Hinnen; W Hörz
Journal:  EMBO J       Date:  1986-10       Impact factor: 11.598

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  38 in total

1.  Regions of GAL4 critical for binding to a promoter in vivo revealed by a visual DNA-binding analysis.

Authors:  Akiko Mizutani; Masafumi Tanaka
Journal:  EMBO J       Date:  2003-05-01       Impact factor: 11.598

2.  A gene-specific requirement for FACT during transcription is related to the chromatin organization of the transcribed region.

Authors:  Silvia Jimeno-González; Fernando Gómez-Herreros; Paula M Alepuz; Sebastián Chávez
Journal:  Mol Cell Biol       Date:  2006-09-25       Impact factor: 4.272

3.  Gene looping is conferred by activator-dependent interaction of transcription initiation and termination machineries.

Authors:  Belal El Kaderi; Scott Medler; Sarita Raghunayakula; Athar Ansari
Journal:  J Biol Chem       Date:  2009-07-14       Impact factor: 5.157

Review 4.  Nucleosome positioning in Saccharomyces cerevisiae.

Authors:  An Jansen; Kevin J Verstrepen
Journal:  Microbiol Mol Biol Rev       Date:  2011-06       Impact factor: 11.056

5.  SWI-SNF complex participation in transcriptional activation at a step subsequent to activator binding.

Authors:  M P Ryan; R Jones; R H Morse
Journal:  Mol Cell Biol       Date:  1998-04       Impact factor: 4.272

Review 6.  Transcription factor access to chromatin.

Authors:  M Beato; K Eisfeld
Journal:  Nucleic Acids Res       Date:  1997-09-15       Impact factor: 16.971

7.  MPE-seq, a new method for the genome-wide analysis of chromatin structure.

Authors:  Haruhiko Ishii; James T Kadonaga; Bing Ren
Journal:  Proc Natl Acad Sci U S A       Date:  2015-06-15       Impact factor: 11.205

8.  The activation domain of GAL4 protein mediates cooperative promoter binding with general transcription factors in vivo.

Authors:  S Vashee; T Kodadek
Journal:  Proc Natl Acad Sci U S A       Date:  1995-11-07       Impact factor: 11.205

9.  Chromatin-dependent transcription factor accessibility rather than nucleosome remodeling predominates during global transcriptional restructuring in Saccharomyces cerevisiae.

Authors:  Karl A Zawadzki; Alexandre V Morozov; James R Broach
Journal:  Mol Biol Cell       Date:  2009-06-03       Impact factor: 4.138

10.  Yeast genetic analysis reveals the involvement of chromatin reassembly factors in repressing HIV-1 basal transcription.

Authors:  Manuela Vanti; Edurne Gallastegui; Iñaki Respaldiza; Alfonso Rodríguez-Gil; Fernando Gómez-Herreros; Silvia Jimeno-González; Albert Jordan; Sebastián Chávez
Journal:  PLoS Genet       Date:  2009-01-16       Impact factor: 5.917

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