Literature DB >> 27932801

DNA-encoded chemistry: enabling the deeper sampling of chemical space.

Robert A Goodnow1,2, Christoph E Dumelin3, Anthony D Keefe4.   

Abstract

DNA-encoded chemical library technologies are increasingly being adopted in drug discovery for hit and lead generation. DNA-encoded chemistry enables the exploration of chemical spaces four to five orders of magnitude more deeply than is achievable by traditional high-throughput screening methods. Operation of this technology requires developing a range of capabilities including aqueous synthetic chemistry, building block acquisition, oligonucleotide conjugation, large-scale molecular biological transformations, selection methodologies, PCR, sequencing, sequence data analysis and the analysis of large chemistry spaces. This Review provides an overview of the development and applications of DNA-encoded chemistry, highlighting the challenges and future directions for the use of this technology.

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Year:  2016        PMID: 27932801     DOI: 10.1038/nrd.2016.213

Source DB:  PubMed          Journal:  Nat Rev Drug Discov        ISSN: 1474-1776            Impact factor:   84.694


  99 in total

1.  The generality of DNA-templated synthesis as a basis for evolving non-natural small molecules.

Authors:  Z J Gartner; D R Liu
Journal:  J Am Chem Soc       Date:  2001-07-18       Impact factor: 15.419

Review 2.  Selecting chemicals: the emerging utility of DNA-encoded libraries.

Authors:  Matthew A Clark
Journal:  Curr Opin Chem Biol       Date:  2010-03-26       Impact factor: 8.822

3.  Complex synthetic chemical libraries indexed with molecular tags.

Authors:  M H Ohlmeyer; R N Swanson; L W Dillard; J C Reader; G Asouline; R Kobayashi; M Wigler; W C Still
Journal:  Proc Natl Acad Sci U S A       Date:  1993-12-01       Impact factor: 11.205

Review 4.  Encoding methods for combinatorial chemistry.

Authors:  A W Czarnik
Journal:  Curr Opin Chem Biol       Date:  1997-06       Impact factor: 8.822

5.  An autonomous molecular assembler for programmable chemical synthesis.

Authors:  Wenjing Meng; Richard A Muscat; Mireya L McKee; Phillip J Milnes; Afaf H El-Sagheer; Jonathan Bath; Benjamin G Davis; Tom Brown; Rachel K O'Reilly; Andrew J Turberfield
Journal:  Nat Chem       Date:  2016-04-11       Impact factor: 24.427

6.  The Role of Phosphodiesterase 12 (PDE12) as a Negative Regulator of the Innate Immune Response and the Discovery of Antiviral Inhibitors.

Authors:  Edgar R Wood; Randy Bledsoe; Jing Chai; Philias Daka; Hongfeng Deng; Yun Ding; Sarah Harris-Gurley; Luz Helena Kryn; Eldridge Nartey; James Nichols; Robert T Nolte; Ninad Prabhu; Cecil Rise; Timothy Sheahan; J Brad Shotwell; Danielle Smith; Vince Tai; J David Taylor; Ginger Tomberlin; Liping Wang; Bruce Wisely; Shihyun You; Bing Xia; Hamilton Dickson
Journal:  J Biol Chem       Date:  2015-06-08       Impact factor: 5.157

7.  Autonomous multistep organic synthesis in a single isothermal solution mediated by a DNA walker.

Authors:  Yu He; David R Liu
Journal:  Nat Nanotechnol       Date:  2010-10-10       Impact factor: 39.213

8.  DNA display III. Solid-phase organic synthesis on unprotected DNA.

Authors:  David R Halpin; Juanghae A Lee; S Jarrett Wrenn; Pehr B Harbury
Journal:  PLoS Biol       Date:  2004-06-22       Impact factor: 8.029

9.  DNA display I. Sequence-encoded routing of DNA populations.

Authors:  David R Halpin; Pehr B Harbury
Journal:  PLoS Biol       Date:  2004-06-22       Impact factor: 8.029

10.  DNA display II. Genetic manipulation of combinatorial chemistry libraries for small-molecule evolution.

Authors:  David R Halpin; Pehr B Harbury
Journal:  PLoS Biol       Date:  2004-06-22       Impact factor: 8.029

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  100 in total

1.  Multistep Synthesis of 1,2,4-Oxadiazoles via DNA-Conjugated Aryl Nitrile Substrates.

Authors:  Huang-Chi Du; Madison C Bangs; Nicholas Simmons; Martin M Matzuk
Journal:  Bioconjug Chem       Date:  2019-04-10       Impact factor: 4.774

2.  Chemically Programmable and Switchable CAR-T Therapy.

Authors:  Junpeng Qi; Kohei Tsuji; David Hymel; Terrence R Burke; Michael Hudecek; Christoph Rader; Haiyong Peng
Journal:  Angew Chem Int Ed Engl       Date:  2020-05-18       Impact factor: 15.336

3.  Selection of DNA-Encoded Libraries to Protein Targets within and on Living Cells.

Authors:  Bo Cai; Dongwook Kim; Saeed Akhand; Yixing Sun; Robert J Cassell; Aktan Alpsoy; Emily C Dykhuizen; Richard M Van Rijn; Michael K Wendt; Casey J Krusemark
Journal:  J Am Chem Soc       Date:  2019-10-22       Impact factor: 15.419

4.  Quick Building Blocks (QBB): An Innovative and Efficient Business Model To Speed Medicinal Chemistry Analog Synthesis.

Authors:  Christopher J Helal; Mark Bundesmann; Susan Hammond; Melissa Holmstrom; Jacquelyn Klug-McLeod; Bruce A Lefker; Dale McLeod; Chakrapani Subramanyam; Oleg Zakaryants; Sylvie Sakata
Journal:  ACS Med Chem Lett       Date:  2019-07-05       Impact factor: 4.345

5.  Idea2Data: Toward a New Paradigm for Drug Discovery.

Authors:  Christos A Nicolaou; Christine Humblet; Hong Hu; Eva M Martin; Frank C Dorsey; Thomas M Castle; Keith Ian Burton; Haitao Hu; Jorg Hendle; Michael J Hickey; Joel Duerksen; Jibo Wang; Jon A Erickson
Journal:  ACS Med Chem Lett       Date:  2019-02-04       Impact factor: 4.345

Review 6.  Advances in targeting 'undruggable' transcription factors with small molecules.

Authors:  Matthew J Henley; Angela N Koehler
Journal:  Nat Rev Drug Discov       Date:  2021-05-18       Impact factor: 84.694

7.  Stereo- and regiodefined DNA-encoded chemical libraries enable efficient tumour-targeting applications.

Authors:  Nicholas Favalli; Gabriele Bassi; Christian Pellegrino; Jacopo Millul; Roberto De Luca; Samuele Cazzamalli; Su Yang; Anika Trenner; Nour L Mozaffari; Renier Myburgh; Mustafa Moroglu; Stuart J Conway; Alessandro A Sartori; Markus G Manz; Richard A Lerner; Peter K Vogt; Jörg Scheuermann; Dario Neri
Journal:  Nat Chem       Date:  2021-04-08       Impact factor: 24.427

8.  What Do You Get from DNA-Encoded Libraries?

Authors:  Alexander L Satz
Journal:  ACS Med Chem Lett       Date:  2018-04-17       Impact factor: 4.345

9.  Kinetically guided radical-based synthesis of C(sp3)-C(sp3) linkages on DNA.

Authors:  Jie Wang; Helena Lundberg; Shota Asai; Pedro Martín-Acosta; Jason S Chen; Stephen Brown; William Farrell; Russell G Dushin; Christopher J O'Donnell; Anokha S Ratnayake; Paul Richardson; Zhiqing Liu; Tian Qin; Donna G Blackmond; Phil S Baran
Journal:  Proc Natl Acad Sci U S A       Date:  2018-06-26       Impact factor: 11.205

Review 10.  Expanding the medicinal chemistry synthetic toolbox.

Authors:  Jonas Boström; Dean G Brown; Robert J Young; György M Keserü
Journal:  Nat Rev Drug Discov       Date:  2018-08-24       Impact factor: 84.694

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