Literature DB >> 15372570

DNA-templated organic synthesis: nature's strategy for controlling chemical reactivity applied to synthetic molecules.

Xiaoyu Li1, David R Liu.   

Abstract

In contrast to the approach commonly taken by chemists, nature controls chemical reactivity by modulating the effective molarity of highly dilute reactants through macromolecule-templated synthesis. Nature's approach enables complex mixtures in a single solution to react with efficiencies and selectivities that cannot be achieved in conventional laboratory synthesis. DNA-templated organic synthesis (DTS) is emerging as a surprisingly general way to control the reactivity of synthetic molecules by using nature's effective-molarity-based approach. Recent developments have expanded the scope and capabilities of DTS from its origins as a model of prebiotic nucleic acid replication to its current ability to translate DNA sequences into complex small-molecule and polymer products of multistep organic synthesis. An understanding of fundamental principles underlying DTS has played an important role in these developments. Early applications of DTS include nucleic acid sensing, small-molecule discovery, and reaction discovery with the help of translation, selection, and amplification methods previously available only to biological molecules.

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Year:  2004        PMID: 15372570     DOI: 10.1002/anie.200400656

Source DB:  PubMed          Journal:  Angew Chem Int Ed Engl        ISSN: 1433-7851            Impact factor:   15.336


  85 in total

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Journal:  Nat Nanotechnol       Date:  2015-10-19       Impact factor: 39.213

3.  Chemistry of periodate-mediated cross-linking of 3,4-dihydroxylphenylalanine-containing molecules to proteins.

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4.  Effects of template sequence and secondary structure on DNA-templated reactivity.

Authors:  Thomas M Snyder; Brian N Tse; David R Liu
Journal:  J Am Chem Soc       Date:  2008-01-08       Impact factor: 15.419

5.  Organometallic activation of a fluorogen for templated nucleic acid detection.

Authors:  Raphael M Franzini; Eric T Kool
Journal:  Org Lett       Date:  2008-06-13       Impact factor: 6.005

6.  Design, synthesis and selection of DNA-encoded small-molecule libraries.

Authors:  Matthew A Clark; Raksha A Acharya; Christopher C Arico-Muendel; Svetlana L Belyanskaya; Dennis R Benjamin; Neil R Carlson; Paolo A Centrella; Cynthia H Chiu; Steffen P Creaser; John W Cuozzo; Christopher P Davie; Yun Ding; G Joseph Franklin; Kurt D Franzen; Malcolm L Gefter; Steven P Hale; Nils J V Hansen; David I Israel; Jinwei Jiang; Malcolm J Kavarana; Michael S Kelley; Christopher S Kollmann; Fan Li; Kenneth Lind; Sibongile Mataruse; Patricia F Medeiros; Jeffrey A Messer; Paul Myers; Heather O'Keefe; Matthew C Oliff; Cecil E Rise; Alexander L Satz; Steven R Skinner; Jennifer L Svendsen; Lujia Tang; Kurt van Vloten; Richard W Wagner; Gang Yao; Baoguang Zhao; Barry A Morgan
Journal:  Nat Chem Biol       Date:  2009-08-02       Impact factor: 15.040

7.  Electrophilic affibodies forming covalent bonds to protein targets.

Authors:  Lotta Holm; Paul Moody; Mark Howarth
Journal:  J Biol Chem       Date:  2009-09-15       Impact factor: 5.157

8.  Autonomous multistep organic synthesis in a single isothermal solution mediated by a DNA walker.

Authors:  Yu He; David R Liu
Journal:  Nat Nanotechnol       Date:  2010-10-10       Impact factor: 39.213

9.  In vitro selection of a DNA-templated small-molecule library reveals a class of macrocyclic kinase inhibitors.

Authors:  Ralph E Kleiner; Christoph E Dumelin; Gerald C Tiu; Kaori Sakurai; David R Liu
Journal:  J Am Chem Soc       Date:  2010-08-25       Impact factor: 15.419

10.  Reactivity-dependent PCR: direct, solution-phase in vitro selection for bond formation.

Authors:  David J Gorin; Adam S Kamlet; David R Liu
Journal:  J Am Chem Soc       Date:  2009-07-08       Impact factor: 15.419

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