Literature DB >> 31435857

19F NMR relaxation studies of fluorosubstituted tryptophans.

Manman Lu1,2, Rieko Ishima1,2, Tatyana Polenova2,3, Angela M Gronenborn4,5.   

Abstract

We present 19F longitudinal and transverse relaxation studies for four differently fluorosubstituted L-tryptophans, which carry single F atoms in the indole ring, both in the context of the free amino acid and when located in the cyclophilin A protein. For the free 4F-, 5F-, 6F-, 7F-L-Trp, satisfactory agreement between experimentally measured and calculated relaxation rates was obtained, suggesting that the parameters used for calculating the rates for the indole frame are sufficiently accurate. We also measured and calculated relaxation rates for four differently 19F-tryptophan labeled cyclophilin A proteins, transferring the parameters from the free amino acid to the protein-bound moiety. Our results suggest that 19F relaxation data of the large and rigid indole ring in Trp are only moderately affected by protein motions and provide critical reference points for evaluating fluorine NMR relaxation in the future, especially in fluorotryptophan labeled proteins.

Entities:  

Keywords:  19F NMR; Cyclophilin A; Fluorotryptophan; Longitudinal relaxation rate; Transverse relaxation rate

Mesh:

Substances:

Year:  2019        PMID: 31435857      PMCID: PMC6878660          DOI: 10.1007/s10858-019-00268-y

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  27 in total

1.  Conformational selection and functional dynamics of calmodulin: a (19)F nuclear magnetic resonance study.

Authors:  Joshua Hoang; R Scott Prosser
Journal:  Biochemistry       Date:  2014-09-03       Impact factor: 3.162

2.  Fluorine-19 nuclear magnetic resonance study of fluorotyrosine alkaline phosphatase: the influence of zinc on protein structure and a conformational change induced by phosphate binding.

Authors:  W E Hull; B D Sykes
Journal:  Biochemistry       Date:  1976-04-06       Impact factor: 3.162

3.  (19)F NMR reveals multiple conformations at the dimer interface of the nonstructural protein 1 effector domain from influenza A virus.

Authors:  James M Aramini; Keith Hamilton; Li-Chung Ma; G V T Swapna; Paul G Leonard; John E Ladbury; Robert M Krug; Gaetano T Montelione
Journal:  Structure       Date:  2014-02-27       Impact factor: 5.006

4.  19F Magic Angle Spinning NMR Spectroscopy and Density Functional Theory Calculations of Fluorosubstituted Tryptophans: Integrating Experiment and Theory for Accurate Determination of Chemical Shift Tensors.

Authors:  Manman Lu; Sucharita Sarkar; Mingzhang Wang; Jodi Kraus; Matthew Fritz; Caitlin M Quinn; Shi Bai; Sean T Holmes; Cecil Dybowski; Glenn P A Yap; Jochem Struppe; Ivan V Sergeyev; Werner Maas; Angela M Gronenborn; Tatyana Polenova
Journal:  J Phys Chem B       Date:  2018-05-30       Impact factor: 2.991

5.  Solid state 19F NMR parameters of fluorine-labeled amino acids. Part I: aromatic substituents.

Authors:  Ulrich H N Dürr; Stephan L Grage; Raiker Witter; Anne S Ulrich
Journal:  J Magn Reson       Date:  2007-12-03       Impact factor: 2.229

6.  Backbone dynamics of Escherichia coli ribonuclease HI: correlations with structure and function in an active enzyme.

Authors:  A M Mandel; M Akke; A G Palmer
Journal:  J Mol Biol       Date:  1995-02-10       Impact factor: 5.469

7.  Dynamic allostery governs cyclophilin A-HIV capsid interplay.

Authors:  Manman Lu; Guangjin Hou; Huilan Zhang; Christopher L Suiter; Jinwoo Ahn; In-Ja L Byeon; Juan R Perilla; Christopher J Langmead; Ivan Hung; Peter L Gor'kov; Zhehong Gan; William Brey; Christopher Aiken; Peijun Zhang; Klaus Schulten; Angela M Gronenborn; Tatyana Polenova
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-09       Impact factor: 11.205

Review 8.  Cyclophilin A: a key player for human disease.

Authors:  P Nigro; G Pompilio; M C Capogrossi
Journal:  Cell Death Dis       Date:  2013-10-31       Impact factor: 8.469

9.  Fluorinated aromatic amino acids are sensitive 19F NMR probes for bromodomain-ligand interactions.

Authors:  Neeraj K Mishra; Andrew K Urick; Stuart W J Ember; Ernst Schönbrunn; William C Pomerantz
Journal:  ACS Chem Biol       Date:  2014-10-27       Impact factor: 5.100

10.  Hidden alternative structures of proline isomerase essential for catalysis.

Authors:  James S Fraser; Michael W Clarkson; Sheena C Degnan; Renske Erion; Dorothee Kern; Tom Alber
Journal:  Nature       Date:  2009-12-03       Impact factor: 49.962

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  7 in total

Review 1.  Small, but powerful and attractive: 19F in biomolecular NMR.

Authors:  Angela M Gronenborn
Journal:  Structure       Date:  2021-12-13       Impact factor: 5.006

2.  Development and Validation of Fluorinated, Aromatic Amino Acid Parameters for Use with the AMBER ff15ipq Protein Force Field.

Authors:  Darian T Yang; Angela M Gronenborn; Lillian T Chong
Journal:  J Phys Chem A       Date:  2022-03-30       Impact factor: 2.944

3.  Two-dimensional 19F-13C correlation NMR for 19F resonance assignment of fluorinated proteins.

Authors:  Alexander A Shcherbakov; Matthias Roos; Byungsu Kwon; Mei Hong
Journal:  J Biomol NMR       Date:  2020-02-22       Impact factor: 2.835

4.  Meet the IUPAB councilor - Angela M. Gronenborn.

Authors:  Angela M Gronenborn
Journal:  Biophys Rev       Date:  2021-11-19

5.  The Magic of Linking Rings: Discovery of a Unique Photoinduced Fluorescent Protein Crosslink.

Authors:  Manman Lu; Dmitri Toptygin; Yufei Xiang; Yi Shi; Charles D Schwieters; Emma C Lipinski; Jinwoo Ahn; In-Ja L Byeon; Angela M Gronenborn
Journal:  J Am Chem Soc       Date:  2022-05-14       Impact factor: 16.383

6.  Combined Protein- and Ligand-Observed NMR Workflow to Screen Fragment Cocktails against Multiple Proteins: A Case Study Using Bromodomains.

Authors:  Jorden A Johnson; Noelle M Olson; Madison J Tooker; Scott K Bur; William C K Pomerantz
Journal:  Molecules       Date:  2020-08-29       Impact factor: 4.411

7.  A suite of 19F based relaxation dispersion experiments to assess biomolecular motions.

Authors:  Jan H Overbeck; Werner Kremer; Remco Sprangers
Journal:  J Biomol NMR       Date:  2020-09-30       Impact factor: 2.835

  7 in total

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