Literature DB >> 32088840

Two-dimensional 19F-13C correlation NMR for 19F resonance assignment of fluorinated proteins.

Alexander A Shcherbakov1, Matthias Roos1, Byungsu Kwon1, Mei Hong2.   

Abstract

19F solid-state NMR is an excellent approach for measuring long-range distances for structure determination and for studying molecular motion. For multi-fluorinated proteins, assignment of 19F chemical shifts has been traditionally carried out using mutagenesis. Here we show 2D 19F-13C correlation experiments that allow efficient assignment of the 19F chemical shifts. We have compared several rotational-echo double-resonance-based pulse sequences and 19F-13C cross polarization (CP) for 2D 19F-13C correlation. We found that direct transferred-echo double-resonance (TEDOR) transfer from 19F to 13C and vice versa outperforms out-and-back coherence transfer schemes. 19F detection gives twofold higher sensitivity over 13C detection for the 2D correlation experiment. At MAS frequencies of 25-35 kHz, double-quantum 19F-13C CP has higher coherence transfer efficiencies than zero-quantum CP. The most efficient TEDOR transfer experiment has higher sensitivity than the most efficient double-quantum CP experiment. We demonstrate these 2D 19F-13C correlation experiments on the model compounds t-Boc-4F-phenylalanine and GB1. Application of the 2D 19F-13C TEDOR correlation experiment to the tetrameric influenza BM2 transmembrane peptide shows intermolecular 13C-19F cross peaks that indicate that the BM2 tetramers cluster in the lipid bilayer in an antiparallel fashion. This clustering may be relevant for the virus budding function of this protein.

Entities:  

Keywords:  19F solid-state NMR; Double-quantum CP; Resonance assignment; TEDOR

Mesh:

Substances:

Year:  2020        PMID: 32088840      PMCID: PMC7445029          DOI: 10.1007/s10858-020-00306-0

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  32 in total

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Authors:  M L Gilchrist; K Monde; Y Tomita; T Iwashita; K Nakanishi; A E McDermott
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Authors:  Mei Hong; William F DeGrado
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3.  Magic-angle spinning solid-state NMR spectroscopy of the beta1 immunoglobulin binding domain of protein G (GB1): 15N and 13C chemical shift assignments and conformational analysis.

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4.  Influenza A M2 Channel Clustering at High Protein/Lipid Ratios: Viral Budding Implications.

Authors:  Joana Paulino; Xiaodong Pang; Ivan Hung; Huan-Xiang Zhou; Timothy A Cross
Journal:  Biophys J       Date:  2019-02-10       Impact factor: 4.033

5.  Elucidating Relayed Proton Transfer through a His-Trp-His Triad of a Transmembrane Proton Channel by Solid-State NMR.

Authors:  Byungsu Kwon; Matthias Roos; Venkata S Mandala; Alexander A Shcherbakov; Mei Hong
Journal:  J Mol Biol       Date:  2019-05-11       Impact factor: 5.469

6.  Long-range 19F-15N distance measurements in highly-13C, 15N-enriched solid proteins with 19F-dephased REDOR shift (FRESH) spectroscopy.

Authors:  Daniel T Graesser; Benjamin J Wylie; Andrew J Nieuwkoop; W Trent Franks; Chad M Rienstra
Journal:  Magn Reson Chem       Date:  2007-12       Impact factor: 2.447

7.  Structure and Mechanism of the Influenza A M218-60 Dimer of Dimers.

Authors:  Loren B Andreas; Marcel Reese; Matthew T Eddy; Vladimir Gelev; Qing Zhe Ni; Eric A Miller; Lyndon Emsley; Guido Pintacuda; James J Chou; Robert G Griffin
Journal:  J Am Chem Soc       Date:  2015-08-31       Impact factor: 15.419

8.  Fast Magic-Angle-Spinning 19F Spin Exchange NMR for Determining Nanometer 19F-19F Distances in Proteins and Pharmaceutical Compounds.

Authors:  Matthias Roos; Tuo Wang; Alexander A Shcherbakov; Mei Hong
Journal:  J Phys Chem B       Date:  2018-03-13       Impact factor: 2.991

9.  Determining Cholesterol Binding to Membrane Proteins by Cholesterol 13C Labeling in Yeast and Dynamic Nuclear Polarization NMR.

Authors:  Matthew R Elkins; Ivan V Sergeyev; Mei Hong
Journal:  J Am Chem Soc       Date:  2018-10-30       Impact factor: 15.419

10.  Fast Magic-Angle Spinning 19 F NMR Spectroscopy of HIV-1 Capsid Protein Assemblies.

Authors:  Mingzhang Wang; Manman Lu; Matthew P Fritz; Caitlin M Quinn; In-Ja L Byeon; Chang-Hyeock Byeon; Jochem Struppe; Werner Maas; Angela M Gronenborn; Tatyana Polenova
Journal:  Angew Chem Int Ed Engl       Date:  2018-10-19       Impact factor: 15.336

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  9 in total

1.  Binding Sites of a Positron Emission Tomography Imaging Agent in Alzheimer's β-Amyloid Fibrils Studied Using 19F Solid-State NMR.

Authors:  Pu Duan; Kelly J Chen; Gayani Wijegunawardena; Aurelio J Dregni; Harrison K Wang; Haifan Wu; Mei Hong
Journal:  J Am Chem Soc       Date:  2022-01-11       Impact factor: 15.419

2.  DNP-enhanced solid-state NMR spectroscopy of chromatin polymers.

Authors:  Nesreen Elathram; Bryce E Ackermann; Galia T Debelouchina
Journal:  J Magn Reson Open       Date:  2022-03-26

3.  pH- and Calcium-Dependent Aromatic Network in the SARS-CoV-2 Envelope Protein.

Authors:  João Medeiros-Silva; Noah H Somberg; Harrison K Wang; Matthew J McKay; Venkata S Mandala; Aurelio J Dregni; Mei Hong
Journal:  J Am Chem Soc       Date:  2022-04-05       Impact factor: 16.383

4.  Clustering of tetrameric influenza M2 peptides in lipid bilayers investigated by 19F solid-state NMR.

Authors:  Madeleine Sutherland; Nhi Tran; Mei Hong
Journal:  Biochim Biophys Acta Biomembr       Date:  2022-03-08       Impact factor: 4.019

Review 5.  From Angstroms to Nanometers: Measuring Interatomic Distances by Solid-State NMR.

Authors:  Alexander A Shcherbakov; João Medeiros-Silva; Nhi Tran; Martin D Gelenter; Mei Hong
Journal:  Chem Rev       Date:  2021-10-25       Impact factor: 72.087

6.  Structure and dynamics of the drug-bound bacterial transporter EmrE in lipid bilayers.

Authors:  Alexander A Shcherbakov; Grant Hisao; Venkata S Mandala; Nathan E Thomas; Mohammad Soltani; E A Salter; James H Davis; Katherine A Henzler-Wildman; Mei Hong
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7.  Structure and drug binding of the SARS-CoV-2 envelope protein transmembrane domain in lipid bilayers.

Authors:  Venkata S Mandala; Matthew J McKay; Alexander A Shcherbakov; Aurelio J Dregni; Antonios Kolocouris; Mei Hong
Journal:  Nat Struct Mol Biol       Date:  2020-11-11       Impact factor: 15.369

8.  High-pH structure of EmrE reveals the mechanism of proton-coupled substrate transport.

Authors:  Alexander A Shcherbakov; Peyton J Spreacker; Aurelio J Dregni; Katherine A Henzler-Wildman; Mei Hong
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9.  Structure and Drug Binding of the SARS-CoV-2 Envelope Protein in Phospholipid Bilayers.

Authors:  Venkata S Mandala; Matthew J McKay; Alexander A Shcherbakov; Aurelio J Dregni; Antonios Kolocouris; Mei Hong
Journal:  Res Sq       Date:  2020-09-24
  9 in total

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