| Literature DB >> 29751608 |
Abstract
Tetrel atoms T (T = Si, Ge, Sn, and Pb) can engage in very strong noncovalent interactions with nucleophiles, which are commonly referred to as tetrel bonds. The ability of such bonds to bind various anions is assessed with a goal of designing an optimal receptor. The Sn atom seems to form the strongest bonds within the tetrel family. It is most effective in the context of a -SnF₃ group and a further enhancement is observed when a positive charge is placed on the receptor. Connection of the -SnF₃ group to either an imidazolium or triazolium provides a strong halide receptor, which can be improved if its point of attachment is changed from the C to an N atom of either ring. Aromaticity of the ring offers no advantage nor is a cyclic system superior to a simple alkyl amine of any chain length. Placing a pair of -SnF₃ groups on a single molecule to form a bipodal dicationic receptor with two tetrel bonds enhances the binding, but falls short of a simple doubling. These two tetrel groups can be placed on opposite ends of an alkyl diamine chain of any length although SnF₃⁺NH₂(CH₂)nNH₂SnF₃⁺ with n between 2 and 4 seems to offer the strongest halide binding. Of the various anions tested, OH− binds most strongly: OH− > F− > Cl− > Br− > I−. The binding energy of the larger NO₃− and HCO₃− anions is more dependent upon the charge of the receptor. This pattern translates into very strong selectivity of binding one anion over another. The tetrel-bonding receptors bind far more strongly to each anion than an equivalent number of K⁺ counterions, which leads to equilibrium ratios in favor of the former of many orders of magnitude.Entities:
Keywords: Gibbs free energy; bipodal; counterion; deformation energy; imidazolium; triazolium
Mesh:
Substances:
Year: 2018 PMID: 29751608 PMCID: PMC6100077 DOI: 10.3390/molecules23051147
Source DB: PubMed Journal: Molecules ISSN: 1420-3049 Impact factor: 4.411
Binding energy (kcal/mol) between Cl− and ImTR3 and ImHTR3+.
| Neutral | Cation | |||
|---|---|---|---|---|
| T | ImTH3 | ImTF3 | ImHTH3+ | ImHTF3+ |
| Si | −1.79 | −2.73 | −5.74 | −23.98 |
| Ge | −1.87 | −8.81 | −5.26 | −32.12 |
| Sn | −3.57 | −23.47 | −10.14 | −43.54 |
| Pb | −2.78 | −20.62 | −7.87 | −39.51 |
Figure 1Geometries of indicated Lewis acids with Cl−. Distances in Å, angles in degs.
R(T·Cl) (Å) in optimized complexes.
| Neutral | Cation | |||
|---|---|---|---|---|
| T | ImTH3 | ImTF3 | ImHTH3+ | ImHTF3+ |
| Si | 3.441 | 2.293 | 2.557 | 2.112 |
| Ge | 3.491 | 2.310 | 3.032 | 2.178 |
| Sn | 3.266 | 2.425 | 2.758 | 2.351 |
| Pb | 3.435 | 2.467 | 2.988 | 2.419 |
∆G(298 K) (kcal/mol) for interactions between Cl− and ImTR3 and ImHTR3+.
| Neutral | Cation | |||
|---|---|---|---|---|
| ImTH3 | ImTF3 | ImHTH3+ | ImHTF3+ | |
| Si | +4.37 | +5.42 | +2.12 | −14.95 |
| Ge | +4.77 | −1.23 | +2.32 | −23.91 |
| Sn | +2.75 | −13.31 | −2.77 | −36.53 |
| Pb | +3.01 | −12.44 | −1.73 | −32.25 |
Figure 2Geometries of indicated Lewis acids with Cl−. Distances in Å, angles in degs.
Energetics (kcal/mol) for interactions between Cl− and indicated receptors.
| ∆G | ∆E | |
|---|---|---|
|
| ||
| ImSnF3+ | −36.53 | −43.54 |
| N-ImSnF3+ | −41.75 | −49.99 |
| TriSnF3+ | −33.29 | −41.30 |
| N-TriSnF3+ | −42.65 | −51.67 |
| N-cycloSnF3+ | −42.39 | −51.76 |
| N-linSnF3+ | −40.85 | −49.53 |
| CNSnF3+ | −42.57 | −50.76 |
| φ-CNSnF3+ | −38.03 | −46.43 |
|
| ||
| φ-(CNSnF3+)2 | −46.00 | −54.83 |
| C5 diamine | −53.63 | −62.76 |
| C4 diamine | −62.21 | −73.11 |
| C3 diamine | −60.42 | −70.52 |
| C2 diamine | −63.30 | −71.94 |
| C1 diamine | −53.33 | −62.73 |
|
| ||
| −53.53 | −75.13 | |
| −66.38 | −103.77 | |
Figure 3Geometries of indicated Lewis acids with Cl−. Distances in Å, angles in degs.
Figure 4Geometries of cyclic F3SnNH2(CH2)nNH2SnF3 dications (Cn) with Cl−. Distances in Å, angles in degrees.
Figure 5Geometries of Cl− with (a) 2 and (b) 3 CH3NH2SnF3+ cations. Distances in Å.
Energetics (kcal/mol) for interactions between anions and indicated mono and di-cationic receptors.
| Anion | ∆G | ∆E |
|---|---|---|
|
| ||
| F− | −64.54 | −73.61 |
| Cl− | −42.57 | −50.76 |
| Br− | −38.83 | −46.64 |
| I− | −36.46 | −43.85 |
| OH− | −78.62 | −89.61 |
| NO3− | −38.46 | −52.81 |
| HCO3− | −52.44 | −67.65 |
|
| ||
| F− | −87.88 | −98.36 |
| Cl− | −63.30 | −71.94 |
| Br− | −59.98 | −68.20 |
| I− | −58.04 | −66.09 |
| OH− | −112.98 | −126.58 |
| NO3− | −64.86 | −79.14 |
| HCO3− | −94.46 | −109.52 |
Figure 6Geometries of indicated anion with CH3NH2SnF3+ cation in upper half and F3SnNH2(CH2)2NH2SnF3+2 dication in lower half. Distances in Å.
Energetics (kcal/mol) for interactions between anions and one or two K+ cations.
| ∆G | ∆E | |
|---|---|---|
|
| ||
| F− | −6.97 | −11.73 |
| Cl− | −1.72 | −5.95 |
| Br− | −0.90 | −4.97 |
| I− | +0.07 | −3.85 |
| OH− | −6.18 | −12.61 |
| NO3− | −1.75 | −8.88 |
| HCO3− | −3.85 | −10.98 |
|
| ||
| F− | −10.03 | −21.71 |
| Cl− | −1.04 | −10.56 |
| Br− | −0.02 | −8.73 |
| I− | +1.96 | −6.60 |
| OH− | −10.07 | −21.79 |
| NO3− | −1.95 | −15.92 |
| HCO3− | −5.08 | −18.82 |
Preference of anions for tetrel-bonding species over one or two K+ cations.
| Anion | Monocation/K+ | Dication/2K+ |
|---|---|---|
| F− | 1.4 × 1042 | 1.0 × 1057 |
| Cl− | 8.2 × 1029 | 3.9 × 1045 |
| Br− | 6.0 × 1027 | 8.2 × 1043 |
| I− | 5.7 × 1026 | 8.7 × 1043 |
| OH− | 1.1 × 1053 | 2.3 × 1075 |
| NO3− | 7.7 × 1026 | 1.2 × 1046 |
| HCO3− | 3.8 × 1035 | 2.9 × 1065 |
Binding, deformation, and interaction energy (kcal/mol) for interactions between Cl− and indicated receptors.
| Receptor | ∆E | Edef | Eint a |
|---|---|---|---|
|
| |||
| ImSnF3+ | −43.54 | 32.82 b | −76.36 |
| N-ImSnF3+ | −49.99 | 43.40 b | −93.39 |
| TriSnF3+ | −41.30 | 34.33 b | −75.63 |
| N-TriSnF3+ | −51.67 | 30.36 b | −82.03 |
| N-cycloSnF3+ | −51.76 | 33.30 b | −85.06 |
| N-linSnF3+ | −49.53 | 24.18 | −73.71 |
| CNSnF3+ | −50.76 | 24.52 | −75.28 |
| φ-CNSnF3+ | −46.43 | 27.15 | −73.58 |
|
| |||
| φ-(CNSnF3+)2 | −54.83 | 44.98 | −99.81 |
| C5 diamine | −62.76 | 38.47 | −101.23 |
| C4 diamine | −73.11 | 27.88 | −100.99 |
| C3 diamine | −70.52 | 31.85 | −102.37 |
| C2 diamine | −71.94 | 29.13 | −101.07 |
| C1 diamine | −62.73 | 36.88 | −99.61 |
a Eint = ∆E − Edef; b two F atoms at apices of trigonal bipyramid in complex.