Literature DB >> 29692414

A-to-I RNA editing - immune protector and transcriptome diversifier.

Eli Eisenberg1, Erez Y Levanon2.   

Abstract

Modifications of RNA affect its function and stability. RNA editing is unique among these modifications because it not only alters the cellular fate of RNA molecules but also alters their sequence relative to the genome. The most common type of RNA editing is A-to-I editing by double-stranded RNA-specific adenosine deaminase (ADAR) enzymes. Recent transcriptomic studies have identified a number of 'recoding' sites at which A-to-I editing results in non-synonymous substitutions in protein-coding sequences. Many of these recoding sites are conserved within (but not usually across) lineages, are under positive selection and have functional and evolutionary importance. However, systematic mapping of the editome across the animal kingdom has revealed that most A-to-I editing sites are located within mobile elements in non-coding parts of the genome. Editing of these non-coding sites is thought to have a critical role in protecting against activation of innate immunity by self-transcripts. Both recoding and non-coding events have implications for genome evolution and, when deregulated, may lead to disease. Finally, ADARs are now being adapted for RNA engineering purposes.

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Year:  2018        PMID: 29692414     DOI: 10.1038/s41576-018-0006-1

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  171 in total

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Journal:  Annu Rev Biochem       Date:  2001-11-09       Impact factor: 23.643

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Journal:  Trends Genet       Date:  2003-04       Impact factor: 11.639

Review 3.  Alternative splicing: new insights from global analyses.

Authors:  Benjamin J Blencowe
Journal:  Cell       Date:  2006-07-14       Impact factor: 41.582

4.  Major transcript of the frameshifted coxII gene from trypanosome mitochondria contains four nucleotides that are not encoded in the DNA.

Authors:  R Benne; J Van den Burg; J P Brakenhoff; P Sloof; J H Van Boom; M C Tromp
Journal:  Cell       Date:  1986-09-12       Impact factor: 41.582

Review 5.  Epitranscriptomics: regulation of mRNA metabolism through modifications.

Authors:  Eyal Peer; Gideon Rechavi; Dan Dominissini
Journal:  Curr Opin Chem Biol       Date:  2017-11-07       Impact factor: 8.822

Review 6.  Mechanisms and consequences of alternative polyadenylation.

Authors:  Dafne Campigli Di Giammartino; Kensei Nishida; James L Manley
Journal:  Mol Cell       Date:  2011-09-16       Impact factor: 17.970

7.  The m1A landscape on cytosolic and mitochondrial mRNA at single-base resolution.

Authors:  Modi Safra; Aldema Sas-Chen; Ronit Nir; Roni Winkler; Aharon Nachshon; Dan Bar-Yaacov; Matthias Erlacher; Walter Rossmanith; Noam Stern-Ginossar; Schraga Schwartz
Journal:  Nature       Date:  2017-10-25       Impact factor: 49.962

Review 8.  RNA editing in plant mitochondria—connecting RNA target sequences and acting proteins.

Authors:  Mizuki Takenaka; Daniil Verbitskiy; Anja Zehrmann; Barbara Härtel; Eszter Bayer-Császár; Franziska Glass; Axel Brennicke
Journal:  Mitochondrion       Date:  2014-04-13       Impact factor: 4.160

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Authors:  Yiannis A Savva; Leila E Rieder; Robert A Reenan
Journal:  Genome Biol       Date:  2012-12-28       Impact factor: 13.583

10.  MODOMICS: a database of RNA modification pathways. 2017 update.

Authors:  Pietro Boccaletto; Magdalena A Machnicka; Elzbieta Purta; Pawel Piatkowski; Blazej Baginski; Tomasz K Wirecki; Valérie de Crécy-Lagard; Robert Ross; Patrick A Limbach; Annika Kotter; Mark Helm; Janusz M Bujnicki
Journal:  Nucleic Acids Res       Date:  2018-01-04       Impact factor: 16.971

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  120 in total

1.  RNA binding candidates for human ADAR3 from substrates of a gain of function mutant expressed in neuronal cells.

Authors:  Yuru Wang; Dong Hee Chung; Leanna R Monteleone; Jie Li; Yao Chiang; Michael D Toney; Peter A Beal
Journal:  Nucleic Acids Res       Date:  2019-11-18       Impact factor: 16.971

Review 2.  Adenosine deaminase acting on RNA (ADAR1), a suppressor of double-stranded RNA-triggered innate immune responses.

Authors:  Charles E Samuel
Journal:  J Biol Chem       Date:  2019-02-01       Impact factor: 5.157

Review 3.  mRNA Editing, Processing and Quality Control in Caenorhabditis elegans.

Authors:  Joshua A Arribere; Hidehito Kuroyanagi; Heather A Hundley
Journal:  Genetics       Date:  2020-07       Impact factor: 4.562

4.  Mutation profiling of a limbless pig reveals genome-wide regulation of RNA processing related to bone development.

Authors:  Yankai Jiang; Xinyue Cao; Haibin Wang
Journal:  J Appl Genet       Date:  2021-07-19       Impact factor: 3.240

5.  Investigating RNA editing in deep transcriptome datasets with REDItools and REDIportal.

Authors:  Claudio Lo Giudice; Marco Antonio Tangaro; Graziano Pesole; Ernesto Picardi
Journal:  Nat Protoc       Date:  2020-01-29       Impact factor: 13.491

Review 6.  Transcription fidelity: New paradigms in epigenetic inheritance, genome instability and disease.

Authors:  Catherine C Bradley; Alasdair J E Gordon; Jennifer A Halliday; Christophe Herman
Journal:  DNA Repair (Amst)       Date:  2019-07-08

7.  Unbiased Identification of trans Regulators of ADAR and A-to-I RNA Editing.

Authors:  Emily C Freund; Anne L Sapiro; Qin Li; Sandra Linder; James J Moresco; John R Yates; Jin Billy Li
Journal:  Cell Rep       Date:  2020-05-19       Impact factor: 9.423

8.  Databases for RNA Editing Collections.

Authors:  Claudio Lo Giudice; Luigi Mansi; Graziano Pesole; Ernesto Picardi
Journal:  Methods Mol Biol       Date:  2021

9.  Adenosine-to-Inosine RNA Editing of Alu Double-Stranded (ds)RNAs Is Markedly Decreased in Multiple Sclerosis and Unedited Alu dsRNAs Are Potent Activators of Proinflammatory Transcriptional Responses.

Authors:  John T Tossberg; Rachel M Heinrich; Virginia M Farley; Philip S Crooke; Thomas M Aune
Journal:  J Immunol       Date:  2020-10-12       Impact factor: 5.422

10.  irCLASH reveals RNA substrates recognized by human ADARs.

Authors:  Yulong Song; Wenbing Yang; Qiang Fu; Liang Wu; Xueni Zhao; Yusen Zhang; Rui Zhang
Journal:  Nat Struct Mol Biol       Date:  2020-03-23       Impact factor: 15.369

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