Literature DB >> 33835458

Databases for RNA Editing Collections.

Claudio Lo Giudice1, Luigi Mansi1, Graziano Pesole1,2,3,4, Ernesto Picardi5,6,7.   

Abstract

A-to-I RNA editing in humans plays a relevant role since it can influence gene expression and increase proteome diversity. In addition, its deregulation has been linked to a variety of human diseases, including neurological disorders and cancer.In the last decade, massive transcriptome sequencing through the RNAseq technology has dramatically improved the investigation of RNA editing at single nucleotide resolution. Nowadays, different bioinformatics resources to discover and/or collect A-to-I events have been released. Hereafter, we initially provide an overview of the state-of-the-art RNA editing databases and, then, we focus on REDIportal, the largest collection of A-to-I events with more than 4.5 million sites from 2660 humans GTEx samples.

Entities:  

Keywords:  A-to-I editing; Database; REDIportal; RNA editing; RNAseq; Transcriptomics

Year:  2021        PMID: 33835458     DOI: 10.1007/978-1-0716-1307-8_25

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  24 in total

1.  Accurate identification of A-to-I RNA editing in human by transcriptome sequencing.

Authors:  Jae Hoon Bahn; Jae-Hyung Lee; Gang Li; Christopher Greer; Guangdun Peng; Xinshu Xiao
Journal:  Genome Res       Date:  2011-09-29       Impact factor: 9.043

Review 2.  RNA Editing: Unexplored Opportunities in the Cardiovascular System.

Authors:  Shizuka Uchida; Steven P Jones
Journal:  Circ Res       Date:  2018-02-02       Impact factor: 17.367

Review 3.  A-to-I RNA editing - immune protector and transcriptome diversifier.

Authors:  Eli Eisenberg; Erez Y Levanon
Journal:  Nat Rev Genet       Date:  2018-08       Impact factor: 53.242

Review 4.  Computational approaches for detection and quantification of A-to-I RNA-editing.

Authors:  Yishay Pinto; Erez Y Levanon
Journal:  Methods       Date:  2018-11-20       Impact factor: 3.608

Review 5.  Proteome diversification by adenosine to inosine RNA editing.

Authors:  Dieter Pullirsch; Michael F Jantsch
Journal:  RNA Biol       Date:  2010-03-25       Impact factor: 4.652

6.  Dynamic regulation of RNA editing in human brain development and disease.

Authors:  Taeyoung Hwang; Chul-Kee Park; Anthony K L Leung; Yuan Gao; Thomas M Hyde; Joel E Kleinman; Anandita Rajpurohit; Ran Tao; Joo Heon Shin; Daniel R Weinberger
Journal:  Nat Neurosci       Date:  2016-06-27       Impact factor: 24.884

7.  Transcriptome-wide sequencing reveals numerous APOBEC1 mRNA-editing targets in transcript 3' UTRs.

Authors:  Brad R Rosenberg; Claire E Hamilton; Michael M Mwangi; Scott Dewell; F Nina Papavasiliou
Journal:  Nat Struct Mol Biol       Date:  2011-01-23       Impact factor: 15.369

8.  Reduced levels of protein recoding by A-to-I RNA editing in Alzheimer's disease.

Authors:  Khen Khermesh; Anna Maria D'Erchia; Michal Barak; Anita Annese; Chaim Wachtel; Erez Y Levanon; Ernesto Picardi; Eli Eisenberg
Journal:  RNA       Date:  2015-12-11       Impact factor: 4.942

9.  Evidence for large diversity in the human transcriptome created by Alu RNA editing.

Authors:  Michal Barak; Erez Y Levanon; Eli Eisenberg; Nurit Paz; Gideon Rechavi; George M Church; Ramit Mehr
Journal:  Nucleic Acids Res       Date:  2009-09-08       Impact factor: 16.971

10.  Increased RNA Editing May Provide a Source for Autoantigens in Systemic Lupus Erythematosus.

Authors:  Shalom Hillel Roth; Miri Danan-Gotthold; Meirav Ben-Izhak; Gideon Rechavi; Cyrille J Cohen; Yoram Louzoun; Erez Y Levanon
Journal:  Cell Rep       Date:  2018-04-03       Impact factor: 9.423

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  1 in total

1.  ADAR-Editing during Ostreid Herpesvirus 1 Infection in Crassostrea gigas: Facts and Limitations.

Authors:  Umberto Rosani; Enrico Bortoletto; Caroline Montagnani; Paola Venier
Journal:  mSphere       Date:  2022-04-05       Impact factor: 4.389

  1 in total

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