Literature DB >> 32632025

mRNA Editing, Processing and Quality Control in Caenorhabditis elegans.

Joshua A Arribere1, Hidehito Kuroyanagi2, Heather A Hundley3.   

Abstract

While DNA serves as the blueprint of life, the distinct functions of each cell are determined by the dynamic expression of genes from the static genome. The amount and specific sequences of RNAs expressed in a given cell involves a number of regulated processes including RNA synthesis (transcription), processing, splicing, modification, polyadenylation, stability, translation, and degradation. As errors during mRNA production can create gene products that are deleterious to the organism, quality control mechanisms exist to survey and remove errors in mRNA expression and processing. Here, we will provide an overview of mRNA processing and quality control mechanisms that occur in Caenorhabditis elegans, with a focus on those that occur on protein-coding genes after transcription initiation. In addition, we will describe the genetic and technical approaches that have allowed studies in C. elegans to reveal important mechanistic insight into these processes.
Copyright © 2020 by the Genetics Society of America.

Entities:  

Keywords:  Caenorhabditis elegans; RNA editing; RNA modification; WormBook; polyadenylation; quality control; splicing

Mesh:

Substances:

Year:  2020        PMID: 32632025      PMCID: PMC7337075          DOI: 10.1534/genetics.119.301807

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  378 in total

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Authors:  Zhiqiang Zhang; Jianhua Fu; David S Gilmour
Journal:  Genes Dev       Date:  2005-07-01       Impact factor: 11.361

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Authors:  B L Bass; H Weintraub
Journal:  Cell       Date:  1987-02-27       Impact factor: 41.582

3.  Analysis of intron sequences reveals hallmarks of circular RNA biogenesis in animals.

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Journal:  Cell Rep       Date:  2014-12-31       Impact factor: 9.423

4.  Polycistronic pre-mRNA processing in vitro: snRNP and pre-mRNA role reversal in trans-splicing.

Authors:  Erika L Lasda; Mary Ann Allen; Thomas Blumenthal
Journal:  Genes Dev       Date:  2010-07-12       Impact factor: 11.361

5.  Effects of ADARs on small RNA processing pathways in C. elegans.

Authors:  M Bryan Warf; Brent A Shepherd; W Evan Johnson; Brenda L Bass
Journal:  Genome Res       Date:  2012-06-06       Impact factor: 9.043

Review 6.  The end of the message: multiple protein-RNA interactions define the mRNA polyadenylation site.

Authors:  Yongsheng Shi; James L Manley
Journal:  Genes Dev       Date:  2015-05-01       Impact factor: 11.361

Review 7.  Modify or die?--RNA modification defects in metazoans.

Authors:  L Peter Sarin; Sebastian A Leidel
Journal:  RNA Biol       Date:  2014       Impact factor: 4.652

8.  mTAIL-seq reveals dynamic poly(A) tail regulation in oocyte-to-embryo development.

Authors:  Jaechul Lim; Mihye Lee; Ahyeon Son; Hyeshik Chang; V Narry Kim
Journal:  Genes Dev       Date:  2016-07-21       Impact factor: 11.361

9.  Ensembl 2016.

Authors:  Andrew Yates; Wasiu Akanni; M Ridwan Amode; Daniel Barrell; Konstantinos Billis; Denise Carvalho-Silva; Carla Cummins; Peter Clapham; Stephen Fitzgerald; Laurent Gil; Carlos García Girón; Leo Gordon; Thibaut Hourlier; Sarah E Hunt; Sophie H Janacek; Nathan Johnson; Thomas Juettemann; Stephen Keenan; Ilias Lavidas; Fergal J Martin; Thomas Maurel; William McLaren; Daniel N Murphy; Rishi Nag; Michael Nuhn; Anne Parker; Mateus Patricio; Miguel Pignatelli; Matthew Rahtz; Harpreet Singh Riat; Daniel Sheppard; Kieron Taylor; Anja Thormann; Alessandro Vullo; Steven P Wilder; Amonida Zadissa; Ewan Birney; Jennifer Harrow; Matthieu Muffato; Emily Perry; Magali Ruffier; Giulietta Spudich; Stephen J Trevanion; Fiona Cunningham; Bronwen L Aken; Daniel R Zerbino; Paul Flicek
Journal:  Nucleic Acids Res       Date:  2015-12-19       Impact factor: 16.971

10.  Nucleotide levels regulate germline proliferation through modulating GLP-1/Notch signaling in C. elegans.

Authors:  Congwu Chi; Diana Ronai; Minh T Than; Cierra J Walker; Aileen K Sewell; Min Han
Journal:  Genes Dev       Date:  2016-02-01       Impact factor: 11.361

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  4 in total

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Journal:  Proc Natl Acad Sci U S A       Date:  2022-01-18       Impact factor: 12.779

2.  m6 A-mediated alternative splicing coupled with nonsense-mediated mRNA decay regulates SAM synthetase homeostasis.

Authors:  Eichi Watabe; Marina Togo-Ohno; Yuma Ishigami; Shotaro Wani; Keiko Hirota; Mariko Kimura-Asami; Sharmin Hasan; Satomi Takei; Akiyoshi Fukamizu; Yutaka Suzuki; Tsutomu Suzuki; Hidehito Kuroyanagi
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3.  Functional analysis of ADARs in planarians supports a bilaterian ancestral role in suppressing double-stranded RNA-response.

Authors:  Dan Bar Yaacov
Journal:  PLoS Pathog       Date:  2022-01-18       Impact factor: 6.823

4.  Spliceosomal component PRP-40 is a central regulator of microexon splicing.

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Journal:  Cell Rep       Date:  2021-08-03       Impact factor: 9.423

  4 in total

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