Literature DB >> 31326363

Transcription fidelity: New paradigms in epigenetic inheritance, genome instability and disease.

Catherine C Bradley1, Alasdair J E Gordon2, Jennifer A Halliday2, Christophe Herman3.   

Abstract

RNA transcription errors are transient, yet frequent, events that do have consequences for the cell. However, until recently we lacked the tools to empirically measure and study these errors. Advances in RNA library preparation and next generation sequencing (NGS) have allowed the spectrum of transcription errors to be empirically measured over the entire transcriptome and in nascent transcripts. Combining these powerful methods with forward and reverse genetic strategies has refined our understanding of transcription factors known to enhance RNA accuracy and will enable the discovery of new candidates. Furthermore, these approaches will shed additional light on the complex interplay between transcription fidelity and other DNA transactions, such as replication and repair, and explore a role for transcription errors in cellular evolution and disease.
Copyright © 2019 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Backtracked RNA polymerase; DNA break repair; DNA resection; DksA; Epimutation; Genetic noise; Genomic integrity; GreA; GreB; Non-genetic phenotypic heterogeneity; TFIIS; Transcription error; Transcription factor; Transcription fidelity

Year:  2019        PMID: 31326363      PMCID: PMC6764924          DOI: 10.1016/j.dnarep.2019.102652

Source DB:  PubMed          Journal:  DNA Repair (Amst)        ISSN: 1568-7856


  103 in total

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Authors:  Rodrigo Bermejo; Mong Sing Lai; Marco Foiani
Journal:  Mol Cell       Date:  2012-03-30       Impact factor: 17.970

2.  Widespread Backtracking by RNA Pol II Is a Major Effector of Gene Activation, 5' Pause Release, Termination, and Transcription Elongation Rate.

Authors:  Ryan M Sheridan; Nova Fong; Angelo D'Alessandro; David L Bentley
Journal:  Mol Cell       Date:  2018-11-29       Impact factor: 17.970

Review 3.  Lost in transcription: transient errors in information transfer.

Authors:  Alasdair J E Gordon; Dominik Satory; Jennifer A Halliday; Christophe Herman
Journal:  Curr Opin Microbiol       Date:  2015-01-28       Impact factor: 7.934

Review 4.  Transcriptional mutagenesis: causes and involvement in tumour development.

Authors:  Damien Brégeon; Paul W Doetsch
Journal:  Nat Rev Cancer       Date:  2011-03       Impact factor: 60.716

5.  Fluctuations in p53 Signaling Allow Escape from Cell-Cycle Arrest.

Authors:  José Reyes; Jia-Yun Chen; Jacob Stewart-Ornstein; Kyle W Karhohs; Caroline S Mock; Galit Lahav
Journal:  Mol Cell       Date:  2018-07-26       Impact factor: 17.970

6.  Conserved rates and patterns of transcription errors across bacterial growth states and lifestyles.

Authors:  Charles C Traverse; Howard Ochman
Journal:  Proc Natl Acad Sci U S A       Date:  2016-02-16       Impact factor: 11.205

7.  Bacteriophage λ N protein inhibits transcription slippage by Escherichia coli RNA polymerase.

Authors:  Adam R Parks; Carolyn Court; Lucyna Lubkowska; Ding J Jin; Mikhail Kashlev; Donald L Court
Journal:  Nucleic Acids Res       Date:  2014-04-07       Impact factor: 16.971

8.  Transcriptional infidelity promotes heritable phenotypic change in a bistable gene network.

Authors:  Alasdair J E Gordon; Jennifer A Halliday; Matthew D Blankschien; Philip A Burns; Fumio Yatagai; Christophe Herman
Journal:  PLoS Biol       Date:  2009-02-24       Impact factor: 8.029

9.  Genome-Wide Spectra of Transcription Insertions and Deletions Reveal That Slippage Depends on RNA:DNA Hybrid Complementarity.

Authors:  Charles C Traverse; Howard Ochman
Journal:  mBio       Date:  2017-08-29       Impact factor: 7.867

10.  The transcription fidelity factor GreA impedes DNA break repair.

Authors:  Priya Sivaramakrishnan; Leonardo A Sepúlveda; Jennifer A Halliday; Jingjing Liu; María Angélica Bravo Núñez; Ido Golding; Susan M Rosenberg; Christophe Herman
Journal:  Nature       Date:  2017-10-04       Impact factor: 49.962

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Journal:  Proc Natl Acad Sci U S A       Date:  2020-08-24       Impact factor: 11.205

2.  RNA polymerase inaccuracy underlies SARS-CoV-2 variants and vaccine heterogeneity.

Authors:  Christophe Herman; Catherine Bradley; Alasdair Gordon; Chen Wang; Matthew Cooke; Brendan Kohrn; Scott Kennedy; Olivier Lichtarge; Shannon Ronca
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3.  Within and Beyond the Nucleotide Addition Cycle of Viral RNA-dependent RNA Polymerases.

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Journal:  Front Mol Biosci       Date:  2022-01-10

Review 4.  Phenotypic mutations contribute to protein diversity and shape protein evolution.

Authors:  Maria Luisa Romero Romero; Cedric Landerer; Jonas Poehls; Agnes Toth-Petroczy
Journal:  Protein Sci       Date:  2022-09       Impact factor: 6.993

5.  Physicochemical Foundations of Life that Direct Evolution: Chance and Natural Selection are not Evolutionary Driving Forces.

Authors:  Didier Auboeuf
Journal:  Life (Basel)       Date:  2020-01-21

6.  In vivo, in vitro and in silico: an open space for the development of microbe-based applications of synthetic biology.

Authors:  Antoine Danchin
Journal:  Microb Biotechnol       Date:  2021-09-27       Impact factor: 5.813

7.  Impact of alanyl-tRNA synthetase editing deficiency in yeast.

Authors:  Hong Zhang; Jiang Wu; Zhihui Lyu; Jiqiang Ling
Journal:  Nucleic Acids Res       Date:  2021-09-27       Impact factor: 16.971

  7 in total

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