Literature DB >> 24732437

RNA editing in plant mitochondria—connecting RNA target sequences and acting proteins.

Mizuki Takenaka1, Daniil Verbitskiy2, Anja Zehrmann2, Barbara Härtel2, Eszter Bayer-Császár2, Franziska Glass2, Axel Brennicke2.   

Abstract

RNA editing changes several hundred cytidines to uridines in the mRNAs of mitochondria in flowering plants. The target cytidines are identified by a subtype of PPR proteins characterized by tandem modules which each binds with a specific upstream nucleotide. Recent progress in correlating repeat structures with nucleotide identities allows to predict and identify target sites in mitochondrial RNAs. Additional proteins have been found to play a role in RNA editing; their precise function still needs to be elucidated. The enzymatic activity performing the C to U reaction may reside in the C-terminal DYW extensions of the PPR proteins; however, this still needs to be proven. Here we update recent progress in understanding RNA editing in flowering plant mitochondria.
Copyright © 2014 Elsevier B.V. and Mitochondria Research Society. All rights reserved.

Entities:  

Keywords:  MORF proteins; PPR proteins; Plant mitochondria; Protein-RNA code; RNA editing

Mesh:

Substances:

Year:  2014        PMID: 24732437     DOI: 10.1016/j.mito.2014.04.005

Source DB:  PubMed          Journal:  Mitochondrion        ISSN: 1567-7249            Impact factor:   4.160


  18 in total

1.  In Arabidopsis thaliana distinct alleles encoding mitochondrial RNA PROCESSING FACTOR 4 support the generation of additional 5' termini of ccmB transcripts.

Authors:  Katrin Stoll; Christian Jonietz; Sarah Schleicher; Catherine Colas des Francs-Small; Ian Small; Stefan Binder
Journal:  Plant Mol Biol       Date:  2017-02-22       Impact factor: 4.076

Review 2.  The application of RNA-seq to the comprehensive analysis of plant mitochondrial transcriptomes.

Authors:  James D Stone; Helena Storchova
Journal:  Mol Genet Genomics       Date:  2014-09-03       Impact factor: 3.291

Review 3.  A-to-I RNA editing - immune protector and transcriptome diversifier.

Authors:  Eli Eisenberg; Erez Y Levanon
Journal:  Nat Rev Genet       Date:  2018-08       Impact factor: 53.242

4.  Reverse U-to-C editing exceeds C-to-U RNA editing in some ferns - a monilophyte-wide comparison of chloroplast and mitochondrial RNA editing suggests independent evolution of the two processes in both organelles.

Authors:  Nils Knie; Felix Grewe; Simon Fischer; Volker Knoop
Journal:  BMC Evol Biol       Date:  2016-06-21       Impact factor: 3.260

5.  Systematic analysis of plant mitochondrial and chloroplast small RNAs suggests organelle-specific mRNA stabilization mechanisms.

Authors:  Hannes Ruwe; Gongwei Wang; Sandra Gusewski; Christian Schmitz-Linneweber
Journal:  Nucleic Acids Res       Date:  2016-05-27       Impact factor: 16.971

6.  Whole plastid transcriptomes reveal abundant RNA editing sites and differential editing status in Phalaenopsis aphrodite subsp. formosana.

Authors:  Ting-Chieh Chen; Yu-Chang Liu; Xuewen Wang; Chi-Hsuan Wu; Chih-Hao Huang; Ching-Chun Chang
Journal:  Bot Stud       Date:  2017-09-16       Impact factor: 2.787

7.  The Schizosaccharomyces pombe PPR protein Ppr10 associates with a novel protein Mpa1 and acts as a mitochondrial translational activator.

Authors:  Yirong Wang; Jianhua Yan; Qingzhen Zhang; Xuting Ma; Juan Zhang; Minghui Su; Xiaojun Wang; Ying Huang
Journal:  Nucleic Acids Res       Date:  2017-04-07       Impact factor: 16.971

8.  The PPR protein SLOW GROWTH 4 is involved in editing of nad4 and affects the splicing of nad2 intron 1.

Authors:  Stefan Weißenberger; Jürgen Soll; Chris Carrie
Journal:  Plant Mol Biol       Date:  2016-12-09       Impact factor: 4.076

9.  In Arabidopsis thaliana mitochondria 5' end polymorphisms of nad4L-atp4 and nad3-rps12 transcripts are linked to RNA PROCESSING FACTORs 1 and 8.

Authors:  Sarah Schleicher; Stefan Binder
Journal:  Plant Mol Biol       Date:  2021-04-28       Impact factor: 4.076

10.  Frequent chloroplast RNA editing in early-branching flowering plants: pilot studies on angiosperm-wide coexistence of editing sites and their nuclear specificity factors.

Authors:  Anke Hein; Monika Polsakiewicz; Volker Knoop
Journal:  BMC Evol Biol       Date:  2016-01-25       Impact factor: 3.260

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