Literature DB >> 16839875

Alternative splicing: new insights from global analyses.

Benjamin J Blencowe1.   

Abstract

Recent analyses of sequence and microarray data have suggested that alternative splicing plays a major role in the generation of proteomic and functional diversity in metazoan organisms. Efforts are now being directed at establishing the full repertoire of functionally relevant transcript variants generated by alternative splicing, the specific roles of such variants in normal and disease physiology, and how alternative splicing is coordinated on a global level to achieve cell- and tissue-specific functions. Recent progress in these areas is summarized in this review.

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Year:  2006        PMID: 16839875     DOI: 10.1016/j.cell.2006.06.023

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  475 in total

Review 1.  Cell-context dependent TCF/LEF expression and function: alternative tales of repression, de-repression and activation potentials.

Authors:  Catherine D Mao; Stephen W Byers
Journal:  Crit Rev Eukaryot Gene Expr       Date:  2011       Impact factor: 1.807

2.  Intragenic alternative splicing coordination is essential for Caenorhabditis elegans slo-1 gene function.

Authors:  Dominique A Glauser; Brandon E Johnson; Richard W Aldrich; Miriam B Goodman
Journal:  Proc Natl Acad Sci U S A       Date:  2011-11-14       Impact factor: 11.205

3.  The induction of serine/threonine protein phosphorylations by a PDGFR/TrkA chimera in stably transfected PC12 cells.

Authors:  Jordane Biarc; Robert J Chalkley; A L Burlingame; Ralph A Bradshaw
Journal:  Mol Cell Proteomics       Date:  2011-10-25       Impact factor: 5.911

4.  The adaptive significance of unproductive alternative splicing in primates.

Authors:  Adonis Skandalis; Mark Frampton; Jon Seger; Miriam H Richards
Journal:  RNA       Date:  2010-08-18       Impact factor: 4.942

5.  Predicting in vivo binding sites of RNA-binding proteins using mRNA secondary structure.

Authors:  Xiao Li; Gerald Quon; Howard D Lipshitz; Quaid Morris
Journal:  RNA       Date:  2010-04-23       Impact factor: 4.942

6.  Deciphering the splicing code.

Authors:  Yoseph Barash; John A Calarco; Weijun Gao; Qun Pan; Xinchen Wang; Ofer Shai; Benjamin J Blencowe; Brendan J Frey
Journal:  Nature       Date:  2010-05-06       Impact factor: 49.962

7.  Deep RNA sequencing at single base-pair resolution reveals high complexity of the rice transcriptome.

Authors:  Guojie Zhang; Guangwu Guo; Xueda Hu; Yong Zhang; Qiye Li; Ruiqiang Li; Ruhong Zhuang; Zhike Lu; Zengquan He; Xiaodong Fang; Li Chen; Wei Tian; Yong Tao; Karsten Kristiansen; Xiuqing Zhang; Songgang Li; Huanming Yang; Jian Wang; Jun Wang
Journal:  Genome Res       Date:  2010-03-19       Impact factor: 9.043

Review 8.  Developments in RNA splicing and disease.

Authors:  Michael G Poulos; Ranjan Batra; Konstantinos Charizanis; Maurice S Swanson
Journal:  Cold Spring Harb Perspect Biol       Date:  2011-01-01       Impact factor: 10.005

9.  A postnatal switch of CELF and MBNL proteins reprograms alternative splicing in the developing heart.

Authors:  Auinash Kalsotra; Xinshu Xiao; Amanda J Ward; John C Castle; Jason M Johnson; Christopher B Burge; Thomas A Cooper
Journal:  Proc Natl Acad Sci U S A       Date:  2008-12-15       Impact factor: 11.205

10.  Evolution of gene structural complexity: an alternative-splicing-based model accounts for intron-containing retrogenes.

Authors:  Chengjun Zhang; Andrea R Gschwend; Yidan Ouyang; Manyuan Long
Journal:  Plant Physiol       Date:  2014-02-11       Impact factor: 8.340

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