Literature DB >> 29610120

Translation Elongation and Recoding in Eukaryotes.

Thomas E Dever1, Jonathan D Dinman2, Rachel Green3.   

Abstract

In this review, we highlight the current understanding of translation elongation and recoding in eukaryotes. In addition to providing an overview of the process, recent advances in our understanding of the role of the factor eIF5A in both translation elongation and termination are discussed. We also highlight mechanisms of translation recoding with a focus on ribosomal frameshifting during elongation. We see that the balance between the basic steps in elongation and the less common recoding events is determined by the kinetics of the different processes as well as by specific sequence determinants.
Copyright © 2018 Cold Spring Harbor Laboratory Press; all rights reserved.

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Year:  2018        PMID: 29610120      PMCID: PMC6071482          DOI: 10.1101/cshperspect.a032649

Source DB:  PubMed          Journal:  Cold Spring Harb Perspect Biol        ISSN: 1943-0264            Impact factor:   10.005


  191 in total

1.  Novel application of sRNA: stimulation of ribosomal frameshifting.

Authors:  R C L Olsthoorn; M Laurs; F Sohet; C W Hilbers; H A Heus; C W A Pleij
Journal:  RNA       Date:  2004-11       Impact factor: 4.942

2.  EF-P is essential for rapid synthesis of proteins containing consecutive proline residues.

Authors:  Lili K Doerfel; Ingo Wohlgemuth; Christina Kothe; Frank Peske; Henning Urlaub; Marina V Rodnina
Journal:  Science       Date:  2012-12-13       Impact factor: 47.728

3.  ADP-ribosylation of translation elongation factor 2 by diphtheria toxin in yeast inhibits translation and cell separation.

Authors:  Maria K Mateyak; Terri Goss Kinzy
Journal:  J Biol Chem       Date:  2013-07-12       Impact factor: 5.157

4.  rRNA pseudouridylation defects affect ribosomal ligand binding and translational fidelity from yeast to human cells.

Authors:  Karen Jack; Cristian Bellodi; Dori M Landry; Rachel O Niederer; Arturas Meskauskas; Sharmishtha Musalgaonkar; Noam Kopmar; Olya Krasnykh; Alison M Dean; Sunnie R Thompson; Davide Ruggero; Jonathan D Dinman
Journal:  Mol Cell       Date:  2011-11-18       Impact factor: 17.970

5.  Functional Dynamics within the Human Ribosome Regulate the Rate of Active Protein Synthesis.

Authors:  Angelica Ferguson; Leyi Wang; Roger B Altman; Daniel S Terry; Manuel F Juette; Benjamin J Burnett; Jose L Alejo; Randall A Dass; Matthew M Parks; C Theresa Vincent; Scott C Blanchard
Journal:  Mol Cell       Date:  2015-10-22       Impact factor: 17.970

Review 6.  Genetic code flexibility in microorganisms: novel mechanisms and impact on physiology.

Authors:  Jiqiang Ling; Patrick O'Donoghue; Dieter Söll
Journal:  Nat Rev Microbiol       Date:  2015-09-22       Impact factor: 60.633

7.  The structure of the eukaryotic ribosome at 3.0 Å resolution.

Authors:  Adam Ben-Shem; Nicolas Garreau de Loubresse; Sergey Melnikov; Lasse Jenner; Gulnara Yusupova; Marat Yusupov
Journal:  Science       Date:  2011-11-17       Impact factor: 47.728

8.  Molecular insights into protein synthesis with proline residues.

Authors:  Sergey Melnikov; Justine Mailliot; Lukas Rigger; Sandro Neuner; Byung-Sik Shin; Gulnara Yusupova; Thomas E Dever; Ronald Micura; Marat Yusupov
Journal:  EMBO Rep       Date:  2016-11-08       Impact factor: 8.807

9.  High-affinity recognition of HIV-1 frameshift-stimulating RNA alters frameshifting in vitro and interferes with HIV-1 infectivity.

Authors:  Leslie O Ofori; Thomas A Hilimire; Ryan P Bennett; Nathaniel W Brown; Harold C Smith; Benjamin L Miller
Journal:  J Med Chem       Date:  2014-01-15       Impact factor: 7.446

10.  Crystal Structure of Hypusine-Containing Translation Factor eIF5A Bound to a Rotated Eukaryotic Ribosome.

Authors:  Sergey Melnikov; Justine Mailliot; Byung-Sik Shin; Lukas Rigger; Gulnara Yusupova; Ronald Micura; Thomas E Dever; Marat Yusupov
Journal:  J Mol Biol       Date:  2016-05-16       Impact factor: 5.469

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  51 in total

Review 1.  Translational Control in Cancer.

Authors:  Nathaniel Robichaud; Nahum Sonenberg; Davide Ruggero; Robert J Schneider
Journal:  Cold Spring Harb Perspect Biol       Date:  2019-07-01       Impact factor: 10.005

Review 2.  Toward a Kinetic Understanding of Eukaryotic Translation.

Authors:  Masaaki Sokabe; Christopher S Fraser
Journal:  Cold Spring Harb Perspect Biol       Date:  2019-02-01       Impact factor: 10.005

Review 3.  Phosphorylation and Signal Transduction Pathways in Translational Control.

Authors:  Christopher G Proud
Journal:  Cold Spring Harb Perspect Biol       Date:  2019-07-01       Impact factor: 10.005

Review 4.  Ribosome Profiling: Global Views of Translation.

Authors:  Nicholas T Ingolia; Jeffrey A Hussmann; Jonathan S Weissman
Journal:  Cold Spring Harb Perspect Biol       Date:  2019-05-01       Impact factor: 10.005

Review 5.  Translational Control during Developmental Transitions.

Authors:  Felipe Karam Teixeira; Ruth Lehmann
Journal:  Cold Spring Harb Perspect Biol       Date:  2019-06-03       Impact factor: 10.005

6.  Trypanosomatid Deoxyhypusine Synthase Activity Is Dependent on Shared Active-Site Complementation between Pseudoenzyme Paralogs.

Authors:  Gustavo A Afanador; Diana R Tomchick; Margaret A Phillips
Journal:  Structure       Date:  2018-09-06       Impact factor: 5.006

Review 7.  The effects of codon bias and optimality on mRNA and protein regulation.

Authors:  Fabian Hia; Osamu Takeuchi
Journal:  Cell Mol Life Sci       Date:  2020-10-30       Impact factor: 9.261

8.  Repression of eEF2K transcription by NF-κB tunes translation elongation to inflammation and dsDNA-sensing.

Authors:  Christopher Bianco; Letitia Thompson; Ian Mohr
Journal:  Proc Natl Acad Sci U S A       Date:  2019-10-21       Impact factor: 11.205

9.  Luciferase-based reporter system for in vitro evaluation of elongation rate and processivity of ribosomes.

Authors:  Ivan Kisly; Carolin Kattel; Jaanus Remme; Tiina Tamm
Journal:  Nucleic Acids Res       Date:  2021-06-04       Impact factor: 16.971

10.  RiboDiPA: a novel tool for differential pattern analysis in Ribo-seq data.

Authors:  Keren Li; C Matthew Hope; Xiaozhong A Wang; Ji-Ping Wang
Journal:  Nucleic Acids Res       Date:  2020-12-02       Impact factor: 16.971

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