Literature DB >> 15496520

Novel application of sRNA: stimulation of ribosomal frameshifting.

R C L Olsthoorn1, M Laurs, F Sohet, C W Hilbers, H A Heus, C W A Pleij.   

Abstract

Small RNAs play an important role in regulation of gene expression in eukaryotic and eubacterial cells by modulating gene expression both at the level of transcription and translation. Here, we show that short complementary RNAs can also affect gene expression by stimulating ribosomal frameshifting in vitro. This finding has important implications for understanding the process of ribosomal frameshifting and for the potential application of small RNAs in the treatment of diseases that are due to frameshift mutations.

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Year:  2004        PMID: 15496520      PMCID: PMC1370657          DOI: 10.1261/rna.7139704

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  7 in total

Review 1.  Structure and function of the stimulatory RNAs involved in programmed eukaryotic-1 ribosomal frameshifting.

Authors:  I Brierley; S Pennell
Journal:  Cold Spring Harb Symp Quant Biol       Date:  2001

2.  An "integrated model" of programmed ribosomal frameshifting.

Authors:  Jason W Harger; Arturas Meskauskas; Jonathan D Dinman
Journal:  Trends Biochem Sci       Date:  2002-09       Impact factor: 13.807

3.  Efficient stimulation of site-specific ribosome frameshifting by antisense oligonucleotides.

Authors:  Michael T Howard; Raymond F Gesteland; John F Atkins
Journal:  RNA       Date:  2004-10       Impact factor: 4.942

Review 4.  Structure, stability and function of RNA pseudoknots involved in stimulating ribosomal frameshifting.

Authors:  D P Giedroc; C A Theimer; P L Nixon
Journal:  J Mol Biol       Date:  2000-04-28       Impact factor: 5.469

5.  Identification and analysis of the pseudoknot-containing gag-pro ribosomal frameshift signal of simian retrovirus-1.

Authors:  E ten Dam; I Brierley; S Inglis; C Pleij
Journal:  Nucleic Acids Res       Date:  1994-06-25       Impact factor: 16.971

6.  Identification of a new antizyme mRNA +1 frameshifting stimulatory pseudoknot in a subset of diverse invertebrates and its apparent absence in intermediate species.

Authors:  Ivaylo P Ivanov; Christine B Anderson; Raymond F Gesteland; John F Atkins
Journal:  J Mol Biol       Date:  2004-06-04       Impact factor: 5.469

7.  Mutational analysis of the "slippery-sequence" component of a coronavirus ribosomal frameshifting signal.

Authors:  I Brierley; A J Jenner; S C Inglis
Journal:  J Mol Biol       Date:  1992-09-20       Impact factor: 5.469

  7 in total
  24 in total

Review 1.  Targeting frameshifting in the human immunodeficiency virus.

Authors:  Léa Brakier-Gingras; Johanie Charbonneau; Samuel E Butcher
Journal:  Expert Opin Ther Targets       Date:  2012-03       Impact factor: 6.902

2.  Stimulation of -1 programmed ribosomal frameshifting by a metabolite-responsive RNA pseudoknot.

Authors:  Ming-Yuan Chou; Szu-Chieh Lin; Kung-Yao Chang
Journal:  RNA       Date:  2010-04-30       Impact factor: 4.942

Review 3.  Augmented genetic decoding: global, local and temporal alterations of decoding processes and codon meaning.

Authors:  Pavel V Baranov; John F Atkins; Martina M Yordanova
Journal:  Nat Rev Genet       Date:  2015-08-11       Impact factor: 53.242

Review 4.  Translational recoding signals: Expanding the synthetic biology toolbox.

Authors:  Jonathan D Dinman
Journal:  J Biol Chem       Date:  2019-04-01       Impact factor: 5.157

Review 5.  Ribosomal frameshifting and transcriptional slippage: From genetic steganography and cryptography to adventitious use.

Authors:  John F Atkins; Gary Loughran; Pramod R Bhatt; Andrew E Firth; Pavel V Baranov
Journal:  Nucleic Acids Res       Date:  2016-07-19       Impact factor: 16.971

Review 6.  Regulators of Viral Frameshifting: More Than RNA Influences Translation Events.

Authors:  Wesley D Penn; Haley R Harrington; Jonathan P Schlebach; Suchetana Mukhopadhyay
Journal:  Annu Rev Virol       Date:  2020-06-29       Impact factor: 10.431

7.  Functional analysis of the SRV-1 RNA frameshifting pseudoknot.

Authors:  René C L Olsthoorn; Richard Reumerman; Cornelis W Hilbers; Cornelis W A Pleij; Hans A Heus
Journal:  Nucleic Acids Res       Date:  2010-07-17       Impact factor: 16.971

Review 8.  Translation Elongation and Recoding in Eukaryotes.

Authors:  Thomas E Dever; Jonathan D Dinman; Rachel Green
Journal:  Cold Spring Harb Perspect Biol       Date:  2018-08-01       Impact factor: 10.005

Review 9.  From Recoding to Peptides for MHC Class I Immune Display: Enriching Viral Expression, Virus Vulnerability and Virus Evasion.

Authors:  John F Atkins; Kate M O'Connor; Pramod R Bhatt; Gary Loughran
Journal:  Viruses       Date:  2021-06-27       Impact factor: 5.048

10.  An intermolecular RNA triplex provides insight into structural determinants for the pseudoknot stimulator of -1 ribosomal frameshifting.

Authors:  Ming-Yuan Chou; Kung-Yao Chang
Journal:  Nucleic Acids Res       Date:  2009-12-08       Impact factor: 16.971

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