Literature DB >> 29486126

Fast Magic-Angle-Spinning 19F Spin Exchange NMR for Determining Nanometer 19F-19F Distances in Proteins and Pharmaceutical Compounds.

Matthias Roos1, Tuo Wang1, Alexander A Shcherbakov1, Mei Hong1.   

Abstract

Internuclear distances measured using NMR provide crucial constraints of three-dimensional structures but are often restricted to about 5 Å due to the weakness of nuclear-spin dipolar couplings. For studying macromolecular assemblies in biology and materials science, distance constraints beyond 1 nm will be extremely valuable. Here we present an extensive and quantitative analysis of the feasibility of 19F spin exchange NMR for precise and robust measurements of interatomic distances up to 1.6 nm at a magnetic field of 14.1 T, under 20-40 kHz magic-angle spinning (MAS). The measured distances are comparable to those achievable from paramagnetic relaxation enhancement but have higher precision, which is better than ±1 Å for short distances and ±2 Å for long distances. For 19F spins with the same isotropic chemical shift but different anisotropic chemical shifts, intermediate MAS frequencies of 15-25 kHz without 1H irradiation accelerate spin exchange. For spectrally resolved 19F-19F spin exchange, 1H-19F dipolar recoupling significantly speeds up 19F-19F spin exchange. On the basis of data from five fluorinated synthetic, pharmaceutical, and biological compounds, we obtained two general curves for spin exchange between CF groups and between CF3 and CF groups. These curves allow 19F-19F distances to be extracted from the measured spin exchange rates after taking into account 19F chemical shifts. These results demonstrate the robustness of 19F spin exchange NMR for distance measurements in a wide range of biological and chemical systems.

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Year:  2018        PMID: 29486126      PMCID: PMC6312665          DOI: 10.1021/acs.jpcb.8b00310

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  22 in total

1.  Determination of Long-Range Distances by Fast Magic-Angle-Spinning Radiofrequency-Driven 19F-19F Dipolar Recoupling NMR.

Authors:  Matthias Roos; Venkata S Mandala; Mei Hong
Journal:  J Phys Chem B       Date:  2018-09-27       Impact factor: 2.991

2.  High-Sensitivity Detection of Nanometer 1H-19F Distances for Protein Structure Determination by 1H-Detected Fast MAS NMR.

Authors:  Alexander A Shcherbakov; Venkata Shiva Mandala; Mei Hong
Journal:  J Phys Chem B       Date:  2019-05-08       Impact factor: 2.991

3.  Fully hydrophobic HIV gp41 adopts a hemifusion-like conformation in phospholipid bilayers.

Authors:  Myungwoon Lee; Chloe A Morgan; Mei Hong
Journal:  J Biol Chem       Date:  2019-08-13       Impact factor: 5.157

4.  Rapid measurement of long-range distances in proteins by multidimensional 13C-19F REDOR NMR under fast magic-angle spinning.

Authors:  Alexander A Shcherbakov; Mei Hong
Journal:  J Biomol NMR       Date:  2018-05-21       Impact factor: 2.835

5.  Elucidating Relayed Proton Transfer through a His-Trp-His Triad of a Transmembrane Proton Channel by Solid-State NMR.

Authors:  Byungsu Kwon; Matthias Roos; Venkata S Mandala; Alexander A Shcherbakov; Mei Hong
Journal:  J Mol Biol       Date:  2019-05-11       Impact factor: 5.469

Review 6.  Elucidating ligand-bound structures of membrane proteins using solid-state NMR spectroscopy.

Authors:  Matthew R Elkins; Mei Hong
Journal:  Curr Opin Struct Biol       Date:  2019-03-20       Impact factor: 6.809

7.  19F Dynamic Nuclear Polarization at Fast Magic Angle Spinning for NMR of HIV-1 Capsid Protein Assemblies.

Authors:  Manman Lu; Mingzhang Wang; Ivan V Sergeyev; Caitlin M Quinn; Jochem Struppe; Melanie Rosay; Werner Maas; Angela M Gronenborn; Tatyana Polenova
Journal:  J Am Chem Soc       Date:  2019-04-01       Impact factor: 15.419

8.  19F Magic Angle Spinning NMR Spectroscopy and Density Functional Theory Calculations of Fluorosubstituted Tryptophans: Integrating Experiment and Theory for Accurate Determination of Chemical Shift Tensors.

Authors:  Manman Lu; Sucharita Sarkar; Mingzhang Wang; Jodi Kraus; Matthew Fritz; Caitlin M Quinn; Shi Bai; Sean T Holmes; Cecil Dybowski; Glenn P A Yap; Jochem Struppe; Ivan V Sergeyev; Werner Maas; Angela M Gronenborn; Tatyana Polenova
Journal:  J Phys Chem B       Date:  2018-05-30       Impact factor: 2.991

9.  Determining Cholesterol Binding to Membrane Proteins by Cholesterol 13C Labeling in Yeast and Dynamic Nuclear Polarization NMR.

Authors:  Matthew R Elkins; Ivan V Sergeyev; Mei Hong
Journal:  J Am Chem Soc       Date:  2018-10-30       Impact factor: 15.419

10.  Two-dimensional 19F-13C correlation NMR for 19F resonance assignment of fluorinated proteins.

Authors:  Alexander A Shcherbakov; Matthias Roos; Byungsu Kwon; Mei Hong
Journal:  J Biomol NMR       Date:  2020-02-22       Impact factor: 2.835

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