Literature DB >> 29785460

Rapid measurement of long-range distances in proteins by multidimensional 13C-19F REDOR NMR under fast magic-angle spinning.

Alexander A Shcherbakov1, Mei Hong2.   

Abstract

The ability to simultaneously measure many long-range distances is critical to efficient and accurate determination of protein structures by solid-state NMR (SSNMR). So far, the most common distance constraints for proteins are 13C-15N distances, which are usually measured using the rotational-echo double-resonance (REDOR) technique. However, these measurements are restricted to distances of up to ~ 5 Å due to the low gyromagnetic ratios of 15N and 13C. Here we present a robust 2D 13C-19F REDOR experiment to measure multiple distances to ~ 10 Å. The technique targets proteins that contain a small number of recombinantly or synthetically incorporated fluorines. The 13C-19F REDOR sequence is combined with 2D 13C-13C correlation to resolve multiple distances in highly 13C-labeled proteins. We show that, at the high magnetic fields which are important for obtaining well resolved 13C spectra, the deleterious effect of the large 19F chemical shift anisotropy for REDOR is ameliorated by fast magic-angle spinning and is further taken into account in numerical simulations. We demonstrate this 2D 13C-13C resolved 13C-19F REDOR technique on 13C, 15N-labeled GB1. A 5-19F-Trp tagged GB1 sample shows the extraction of distances to a single fluorine atom, while a 3-19F-Tyr labeled GB1 sample allows us to evaluate the effects of multi-spin coupling and statistical 19F labeling on distance measurement. Finally, we apply this 2D REDOR experiment to membrane-bound influenza B M2 transmembrane peptide, and show that the distance between the proton-selective histidine residue and the gating tryptophan residue differs from the distances in the solution NMR structure of detergent-bound BM2. This 2D 13C-19F REDOR technique should facilitate SSNMR-based protein structure determination by increasing the measurable distances to the ~ 10 Å range.

Entities:  

Keywords:  Dipolar recoupling; Distance determination; Protein structure determination; Solid-state NMR

Mesh:

Substances:

Year:  2018        PMID: 29785460      PMCID: PMC6314655          DOI: 10.1007/s10858-018-0187-0

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  25 in total

1.  De novo determination of peptide structure with solid-state magic-angle spinning NMR spectroscopy.

Authors:  Chad M Rienstra; Lisa Tucker-Kellogg; Christopher P Jaroniec; Morten Hohwy; Bernd Reif; Michael T McMahon; Bruce Tidor; Tomas Lozano-Pérez; Robert G Griffin
Journal:  Proc Natl Acad Sci U S A       Date:  2002-07-29       Impact factor: 11.205

2.  Membrane-bound dimer structure of a beta-hairpin antimicrobial peptide from rotational-echo double-resonance solid-state NMR.

Authors:  R Mani; M Tang; X Wu; J J Buffy; A J Waring; M A Sherman; M Hong
Journal:  Biochemistry       Date:  2006-07-11       Impact factor: 3.162

3.  Membrane-dependent effects of a cytoplasmic helix on the structure and drug binding of the influenza virus M2 protein.

Authors:  Sarah Cady; Tuo Wang; Mei Hong
Journal:  J Am Chem Soc       Date:  2011-07-07       Impact factor: 15.419

4.  Magic-angle-spinning NMR techniques for measuring long-range distances in biological macromolecules.

Authors:  Mei Hong; Klaus Schmidt-Rohr
Journal:  Acc Chem Res       Date:  2013-02-07       Impact factor: 22.384

5.  Solid state 19F NMR parameters of fluorine-labeled amino acids. Part I: aromatic substituents.

Authors:  Ulrich H N Dürr; Stephan L Grage; Raiker Witter; Anne S Ulrich
Journal:  J Magn Reson       Date:  2007-12-03       Impact factor: 2.229

6.  Long-range 19F-15N distance measurements in highly-13C, 15N-enriched solid proteins with 19F-dephased REDOR shift (FRESH) spectroscopy.

Authors:  Daniel T Graesser; Benjamin J Wylie; Andrew J Nieuwkoop; W Trent Franks; Chad M Rienstra
Journal:  Magn Reson Chem       Date:  2007-12       Impact factor: 2.447

7.  Immobilization of the influenza A M2 transmembrane peptide in virus envelope-mimetic lipid membranes: a solid-state NMR investigation.

Authors:  Wenbin Luo; Sarah D Cady; Mei Hong
Journal:  Biochemistry       Date:  2009-07-14       Impact factor: 3.162

8.  REDOR NMR for drug discovery.

Authors:  Lynette Cegelski
Journal:  Bioorg Med Chem Lett       Date:  2013-08-22       Impact factor: 2.823

9.  Solid-State NMR Investigation of the Conformation, Proton Conduction, and Hydration of the Influenza B Virus M2 Transmembrane Proton Channel.

Authors:  Jonathan K Williams; Daniel Tietze; Myungwoon Lee; Jun Wang; Mei Hong
Journal:  J Am Chem Soc       Date:  2016-06-23       Impact factor: 15.419

10.  Formal reduction potential of 3,5-difluorotyrosine in a structured protein: insight into multistep radical transfer.

Authors:  Kanchana R Ravichandran; Li Liang; JoAnne Stubbe; Cecilia Tommos
Journal:  Biochemistry       Date:  2013-11-22       Impact factor: 3.162

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  17 in total

1.  Determination of Long-Range Distances by Fast Magic-Angle-Spinning Radiofrequency-Driven 19F-19F Dipolar Recoupling NMR.

Authors:  Matthias Roos; Venkata S Mandala; Mei Hong
Journal:  J Phys Chem B       Date:  2018-09-27       Impact factor: 2.991

2.  Oligomeric Structure and Three-Dimensional Fold of the HIV gp41 Membrane-Proximal External Region and Transmembrane Domain in Phospholipid Bilayers.

Authors:  Byungsu Kwon; Myungwoon Lee; Alan J Waring; Mei Hong
Journal:  J Am Chem Soc       Date:  2018-06-22       Impact factor: 15.419

3.  High-Sensitivity Detection of Nanometer 1H-19F Distances for Protein Structure Determination by 1H-Detected Fast MAS NMR.

Authors:  Alexander A Shcherbakov; Venkata Shiva Mandala; Mei Hong
Journal:  J Phys Chem B       Date:  2019-05-08       Impact factor: 2.991

4.  Fully hydrophobic HIV gp41 adopts a hemifusion-like conformation in phospholipid bilayers.

Authors:  Myungwoon Lee; Chloe A Morgan; Mei Hong
Journal:  J Biol Chem       Date:  2019-08-13       Impact factor: 5.157

5.  Measurement of Accurate Interfluorine Distances in Crystalline Organic Solids: A High-Frequency Magic Angle Spinning NMR Approach.

Authors:  Matthew Fritz; Jodi Kraus; Caitlin M Quinn; Glenn P A Yap; Jochem Struppe; Ivan V Sergeyev; Angela M Gronenborn; Tatyana Polenova
Journal:  J Phys Chem B       Date:  2019-12-10       Impact factor: 2.991

Review 6.  Elucidating ligand-bound structures of membrane proteins using solid-state NMR spectroscopy.

Authors:  Matthew R Elkins; Mei Hong
Journal:  Curr Opin Struct Biol       Date:  2019-03-20       Impact factor: 6.809

7.  Binding Sites of a Positron Emission Tomography Imaging Agent in Alzheimer's β-Amyloid Fibrils Studied Using 19F Solid-State NMR.

Authors:  Pu Duan; Kelly J Chen; Gayani Wijegunawardena; Aurelio J Dregni; Harrison K Wang; Haifan Wu; Mei Hong
Journal:  J Am Chem Soc       Date:  2022-01-11       Impact factor: 15.419

8.  Determining Cholesterol Binding to Membrane Proteins by Cholesterol 13C Labeling in Yeast and Dynamic Nuclear Polarization NMR.

Authors:  Matthew R Elkins; Ivan V Sergeyev; Mei Hong
Journal:  J Am Chem Soc       Date:  2018-10-30       Impact factor: 15.419

9.  Two-dimensional 19F-13C correlation NMR for 19F resonance assignment of fluorinated proteins.

Authors:  Alexander A Shcherbakov; Matthias Roos; Byungsu Kwon; Mei Hong
Journal:  J Biomol NMR       Date:  2020-02-22       Impact factor: 2.835

10.  Clustering of tetrameric influenza M2 peptides in lipid bilayers investigated by 19F solid-state NMR.

Authors:  Madeleine Sutherland; Nhi Tran; Mei Hong
Journal:  Biochim Biophys Acta Biomembr       Date:  2022-03-08       Impact factor: 4.019

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