| Literature DB >> 29484125 |
Yujiro Nishizawa1,2, Masamitsu Konno2,3, Ayumu Asai2,3, Jun Koseki3, Koichi Kawamoto1,2, Norikatsu Miyoshi1, Hidekazu Takahashi1, Naohiro Nishida1, Naotsugu Haraguchi1, Daisuke Sakai2, Toshihiro Kudo2, Taishi Hata1, Chu Matsuda1, Tsunekazu Mizushima1,4, Taroh Satoh2, Yuichiro Doki1, Masaki Mori1, Hideshi Ishii2,3.
Abstract
Recent studies that have emerged on the diversity of RNA modification in tumors suggest their eligibility as bona fide targets in diagnosis and drug discovery. N6-methyladenosine (m6A) was first reported and is most common in epitranscriptome modification of various RNAs. The YT521-B homology (YTH) domain family are representative m6A-binding proteins, but how the YTH domain family is involved in cancer remains to be clearly understood. Given that clinical sequence data in colorectal cancer indicate that overexpression of YTHDF1 is outstanding among other family members, we studied the role of Ythdf1 and the transcriptional control of YTHDF1. Immunostaining of Ythdf1 showed that its expression was associated with various malignant tumor behaviors, such as depth, lymph node metastasis, and poorer cancer stages. The study of patient survival indicated that patients with high Ythdf1 expression had significantly poorer overall survival. The results indicated that Ythdf1 expression is an independent prognostic factor of patients. The in vitro study showed that the knockdown of YTHDF1 resulted in the suppression of cancer proliferation and sensitization to the exposure of anticancer drugs such as fluorouracil and oxaliplatin. Importantly, the study upstream of the YTHDF1 gene indicated that an oncogenic transcription factor c-Myc was associated with YTHDF1 in both expression and chromatin immunoprecipitation data. Moreover, the knockdown experiments of c-Myc showed the inhibition of YTHDF1, supporting a notion of c-Myc-driven YTHDF1 axis significance. These data suggest that m6A reader Ythdf1 plays a significant role in colorectal cancer progression.Entities:
Keywords: YTHDF1; c-MYC; chemosensitivity; colorectal cancer; proliferation
Year: 2017 PMID: 29484125 PMCID: PMC5800917 DOI: 10.18632/oncotarget.23554
Source DB: PubMed Journal: Oncotarget ISSN: 1949-2553
Figure 1Predominant expression of YTHDF1 in CRC tissues
(A) Expressions of the YTH domain family in colorectal tumor or normal tissue. We analyzed expressions of the YTH domain family using the TCGA colorectal adenocarcinoma (COADREAD) database, which consisted of 671 tumor parts and 51 normal tissues. (B) Representative immunohistochemical staining of YTHDF1 in CRC. “*” shows a normal part and “**” shows a tumor of colorectal tissue.
YTHDF1 expression and clinicopathological features of CRC
| Positive ( | Negative ( | ||
|---|---|---|---|
| Patient background | |||
| Tumor characteristics | |||
| por/muc | 3/0 | 0/3 | |
| Depth | 0.0009* | ||
| Tis/T1/T2 | 0/1/4 | 8/6/8 | |
| T3/T4 | 19/3 | 13/1 | |
| Lymph node metastasis | 0.044* | ||
| N0 | 10 | 23 | |
| N1/N2/N3 | 11/2/4 | 10/1/2 | |
| Distant metastasis | 0.036* | ||
| M0 | 21 | 35 | |
| M1 | 6 | 1 | |
| Lymphatic duct invasion | 0.0608 | ||
| ly0 | 5 | 15 | |
| ly1/ly2 | 16/6 | 17/4 | |
| Venous invasion | 0.3654 | ||
| v0 | 23 | 27 | |
| v1/v2 | 2/2 | 8/1 | |
| Stage | 0.0226* | ||
| 0/I/II | 0/4/5 | 8/12/3 | |
| IIIa/IIIb/IV | 9/3/6 | 8/4/1 |
tub1: well-differentiated tubular adenocarcinoma, tub2: moderately differentiated tubular adenocarcinoma, pap: papillary adenocarcinoma, por: poorly differentiated adenocarcinoma, muc: mucinous adenocarcinoma, *p < 0.05.
Figure 2High expression of YTHDF1 was associated with poorer overall survival
(A) Kaplan–Meier relapse-free survival curves of patients with CRC (n = 56). The relapse-free survival rate of patients in the YTHDF1-positive group was not significantly lower than that of patients in the negative group (p = 0.2760). (B) Kaplan–Meier overall survival curves of patients with CRC (n = 63) according to immunohistochemical staining of YTHDF1. The survival rate of the YTHDF1-positive group was significantly lower than that of the negative group (p = 0.0009).
Univariate and multivariate analysis for overall survival (Cox regression model)
| Clinicopathological factors | Univariate | Multivariate | ||||
|---|---|---|---|---|---|---|
| HR | 95% CI | HR | 95% CI | |||
| Gender | 0.78 | 0.22‒3.04 | 0.7000 | |||
| Histological type | 5.12 | 1.09‒18.6 | 0.0395* | 18.37 | 2.73–184.5 | 0.0038* |
| Depth | 8.09 | 1.52‒149.1 | 0.0106* | 2.37 | 0.26–55.8 | 0.470 |
| Lymph node metastasis | 5.32 | 1.33‒35.3 | 0.0165* | 2.033 | 0.34–20.7 | 0.451 |
| Distant metastasis | 19.68 | 5.13‒80.6 | < 0.0001* | 15.00 | 2.90–110.4 | 0.0013* |
| YTHDF1 expression | 15.36 | 2.86‒284.1 | 0.0005* | 9.679 | 1.52–194.6 | 0.013* |
HR: Hazard ratio, CI: Confidence interval
*p < 0.05.
Figure 3Knockdown of YTHDF1 affects cell proliferation and chemosensitivity in CRC cells
(A) mRNA and protein expression levels of YTHDF1 compared to negative control siRNA (NC siRNA) or two types of YTHDF1 siRNA (YTHDF1 siRNA1 and siRNA2) transfected SW480 and HT29 cells. YTHDF1 expression was normalized to RPLP0 in qRT-PCR and normalized to β-actin in Western blotting. *p < 0.05. (B) Proliferation assay after transfecting SW480 and HT29 cells with NC siRNA or YTHDF1 siRNA1 or siRNA2. Each bar represents the mean ± SEM of samples measured in triplicate. *p < 0.05. (C) Chemosensitivity assay using 5-FU or L-OHP after transfecting HT29 cells with NC siRNA or YTHDF1 siRNA1 or siRNA2. Each bar represents the mean ± SEM of samples measured in triplicate. *p < 0.05.
Figure 4YTHDF1 was transcriptionally regulated by c-MYC
(A) Correlations between the YTH domain family and c-MYC. We used the TCGA colorectal adenocarcinoma (COADREAD) database, which consisted of 677 tumor parts. (B) ChIP-atlas (http://chip-atlas.org/) data show that c-MYC binds to the transcription initiation region of YTHDF1. (C) mRNA expression level of c-MYC compared to negative control siRNA (NC siRNA) or c-MYC siRNA (25, 50, and 100 nM) transfected cells. YTHDF1 expression was normalized to GAPDH in qRT-PCR. *p < 0.05. (D) mRNA expression level of YTHDF1 compared to negative control siRNA (NC siRNA) or c-MYC siRNA (25, 50, and 100 nM) transfected cells. YTHDF1 expression was normalized to GAPDH in qRT-PCR. *p < 0.05.