Literature DB >> 29443972

The ABCs of PTMs.

Karl W Barber1, Jesse Rinehart1.   

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Year:  2018        PMID： 29443972      PMCID： PMC5979263          DOI： 10.1038/nchembio.2572

Source DB:  PubMed          Journal:  Nat Chem Biol        ISSN： 1552-4450            Impact factor:   15.040


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  23 in total

1.  Reproducible isolation of distinct, overlapping segments of the phosphoproteome.

Authors:  Bernd Bodenmiller; Lukas N Mueller; Markus Mueller; Bruno Domon; Ruedi Aebersold
Journal:  Nat Methods       Date:  2007-02-11       Impact factor: 28.547

2.  An orthogonalized platform for genetic code expansion in both bacteria and eukaryotes.

Authors:  James S Italia; Partha Sarathi Addy; Chester J J Wrobel; Lisa A Crawford; Marc J Lajoie; Yunan Zheng; Abhishek Chatterjee
Journal:  Nat Chem Biol       Date:  2017-02-13       Impact factor: 15.040

3.  Expanding the genetic code of Escherichia coli with phosphoserine.

Authors:  Hee-Sung Park; Michael J Hohn; Takuya Umehara; Li-Tao Guo; Edith M Osborne; Jack Benner; Christopher J Noren; Jesse Rinehart; Dieter Söll
Journal:  Science       Date:  2011-08-26       Impact factor: 47.728

4.  Defining roles of PARKIN and ubiquitin phosphorylation by PINK1 in mitochondrial quality control using a ubiquitin replacement strategy.

Authors:  Alban Ordureau; Jin-Mi Heo; David M Duda; Joao A Paulo; Jennifer L Olszewski; David Yanishevski; Jesse Rinehart; Brenda A Schulman; J Wade Harper
Journal:  Proc Natl Acad Sci U S A       Date:  2015-05-12       Impact factor: 11.205

5.  GlycoDelete engineering of mammalian cells simplifies N-glycosylation of recombinant proteins.

Authors:  Leander Meuris; Francis Santens; Greg Elson; Nele Festjens; Morgane Boone; Anaëlle Dos Santos; Simon Devos; François Rousseau; Evelyn Plets; Erica Houthuys; Pauline Malinge; Giovanni Magistrelli; Laura Cons; Laurence Chatel; Bart Devreese; Nico Callewaert
Journal:  Nat Biotechnol       Date:  2014-04-20       Impact factor: 54.908

6.  ISWI chromatin remodellers sense nucleosome modifications to determine substrate preference.

Authors:  Geoffrey P Dann; Glen P Liszczak; John D Bagert; Manuel M Müller; Uyen T T Nguyen; Felix Wojcik; Zachary Z Brown; Jeffrey Bos; Tatyana Panchenko; Rasmus Pihl; Samuel B Pollock; Katharine L Diehl; C David Allis; Tom W Muir
Journal:  Nature       Date:  2017-08-02       Impact factor: 49.962

7.  Genomically recoded organisms expand biological functions.

Authors:  Marc J Lajoie; Alexis J Rovner; Daniel B Goodman; Hans-Rudolf Aerni; Adrian D Haimovich; Gleb Kuznetsov; Jaron A Mercer; Harris H Wang; Peter A Carr; Joshua A Mosberg; Nadin Rohland; Peter G Schultz; Joseph M Jacobson; Jesse Rinehart; George M Church; Farren J Isaacs
Journal:  Science       Date:  2013-10-18       Impact factor: 47.728

Review 8.  Expanding and reprogramming the genetic code.

Authors:  Jason W Chin
Journal:  Nature       Date:  2017-10-04       Impact factor: 49.962

9.  Acetylation regulates cyclophilin A catalysis, immunosuppression and HIV isomerization.

Authors:  Michael Lammers; Heinz Neumann; Jason W Chin; Leo C James
Journal:  Nat Chem Biol       Date:  2010-04-04       Impact factor: 15.040

10.  A semi-synthetic organism that stores and retrieves increased genetic information.

Authors:  Yorke Zhang; Jerod L Ptacin; Emil C Fischer; Hans R Aerni; Carolina E Caffaro; Kristine San Jose; Aaron W Feldman; Court R Turner; Floyd E Romesberg
Journal:  Nature       Date:  2017-11-29       Impact factor: 49.962
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  16 in total

Review 1.  iPTMnet RESTful API for Post-translational Modification Network Analysis.

Authors:  Sachin Gavali; Karen E Ross; Julie Cowart; Chuming Chen; Cathy H Wu
Journal:  Methods Mol Biol       Date:  2022

2.  Proteomic variations of esophageal squamous cell carcinoma revealed by combining RNA-seq proteogenomics and G-PTM search strategy.

Authors:  Pooja Ramesh; Vidhyavathy Nagarajan; Vartika Khanchandani; Vasanth Kumar Desai; Vidya Niranjan
Journal:  Heliyon       Date:  2020-08-29

Review 3.  Characterizing Post-Translational Modifications and Their Effects on Protein Conformation Using NMR Spectroscopy.

Authors:  Ajith Kumar; Vaishali Narayanan; Ashok Sekhar
Journal:  Biochemistry       Date:  2019-11-04       Impact factor: 3.162

Review 4.  Targeting Aggrephagy for the Treatment of Alzheimer's Disease.

Authors:  Sandeep Malampati; Ju-Xian Song; Benjamin Chun-Kit Tong; Anusha Nalluri; Chuan-Bin Yang; Ziying Wang; Sravan Gopalkrishnashetty Sreenivasmurthy; Zhou Zhu; Jia Liu; Chengfu Su; Senthilkumar Krishnamoorthi; Ashok Iyaswamy; King-Ho Cheung; Jia-Hong Lu; And Min Li
Journal:  Cells       Date:  2020-01-28       Impact factor: 6.600

5.  Random coil shifts of posttranslationally modified amino acids.

Authors:  Anne C Conibear; K Johan Rosengren; Christian F W Becker; Hanspeter Kaehlig
Journal:  J Biomol NMR       Date:  2019-07-17       Impact factor: 2.835

6.  Helicobacter pylori-induced gastric cancer is orchestrated by MRCKβ-mediated Siah2 phosphorylation.

Authors:  Pragyesh Dixit; Shrikant B Kokate; Indrajit Poirah; Debashish Chakraborty; Duane T Smoot; Hassan Ashktorab; Niranjan Rout; Shivaram P Singh; Asima Bhattacharyya
Journal:  J Biomed Sci       Date:  2021-02-03       Impact factor: 8.410

Review 7.  Tau Post-translational Modifications: Dynamic Transformers of Tau Function, Degradation, and Aggregation.

Authors:  Carolina Alquezar; Shruti Arya; Aimee W Kao
Journal:  Front Neurol       Date:  2021-01-07       Impact factor: 4.003

8.  Competition between two phosphatases fine-tunes Hedgehog signaling.

Authors:  Min Liu; Aiguo Liu; Jie Wang; Yansong Zhang; Yajuan Li; Ying Su; Alan Jian Zhu
Journal:  J Cell Biol       Date:  2021-02-01       Impact factor: 10.539

9.  Deep Profiling of Microgram-Scale Proteome by Tandem Mass Tag Mass Spectrometry.

Authors:  Danting Liu; Shu Yang; Kanisha Kavdia; Jeffrey M Sifford; Zhiping Wu; Boer Xie; Zhen Wang; Vishwajeeth R Pagala; Hong Wang; Kaiwen Yu; Kaushik Kumar Dey; Anthony A High; Geidy E Serrano; Thomas G Beach; Junmin Peng
Journal:  J Proteome Res       Date:  2020-11-11       Impact factor: 4.466

Review 10.  Intrinsically Magnetic Cells: A Review on Their Natural Occurrence and Synthetic Generation.

Authors:  Alexander Pekarsky; Oliver Spadiut
Journal:  Front Bioeng Biotechnol       Date:  2020-10-19
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