Literature DB >> 28192410

An orthogonalized platform for genetic code expansion in both bacteria and eukaryotes.

James S Italia1, Partha Sarathi Addy1, Chester J J Wrobel1, Lisa A Crawford1, Marc J Lajoie2, Yunan Zheng1, Abhishek Chatterjee1.   

Abstract

In this study, we demonstrate the feasibility of expanding the genetic code of Escherichia coli using its own tryptophanyl-tRNA synthetase and tRNA (TrpRS-tRNATrp) pair. This was made possible by first functionally replacing this endogenous pair with an E. coli-optimized counterpart from Saccharomyces cerevisiae, and then reintroducing the liberated E. coli TrpRS-tRNATrp pair into the resulting strain as a nonsense suppressor, which was then followed by its directed evolution to genetically encode several new unnatural amino acids (UAAs). These engineered TrpRS-tRNATrp variants were also able to drive efficient UAA mutagenesis in mammalian cells. Since bacteria-derived aminoacyl-tRNA synthetase (aaRS)-tRNA pairs are typically orthogonal in eukaryotes, our work provides a general strategy to develop additional aaRS-tRNA pairs that can be used for UAA mutagenesis of proteins expressed in both E. coli and eukaryotes.

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Year:  2017        PMID: 28192410     DOI: 10.1038/nchembio.2312

Source DB:  PubMed          Journal:  Nat Chem Biol        ISSN: 1552-4450            Impact factor:   15.040


  33 in total

1.  A scalable protocol for the isolation of large-sized genomic DNA within an hour from several bacteria.

Authors:  C K Syn; S Swarup
Journal:  Anal Biochem       Date:  2000-02-01       Impact factor: 3.365

2.  Influence of codon context on UGA suppression and readthrough.

Authors:  J Kopelowitz; C Hampe; R Goldman; M Reches; H Engelberg-Kulka
Journal:  J Mol Biol       Date:  1992-05-20       Impact factor: 5.469

3.  A facile system for genetic incorporation of two different noncanonical amino acids into one protein in Escherichia coli.

Authors:  Wei Wan; Ying Huang; Zhiyong Wang; William K Russell; Pei-Jing Pai; David H Russell; Wenshe R Liu
Journal:  Angew Chem Int Ed Engl       Date:  2010-04-19       Impact factor: 15.336

4.  Genetic incorporation of multiple unnatural amino acids into proteins in mammalian cells.

Authors:  Han Xiao; Abhishek Chatterjee; Sei-hyun Choi; Krishna M Bajjuri; Subhash C Sinha; Peter G Schultz
Journal:  Angew Chem Int Ed Engl       Date:  2013-11-08       Impact factor: 15.336

5.  Expanding the genetic code of Escherichia coli.

Authors:  L Wang; A Brock; B Herberich; P G Schultz
Journal:  Science       Date:  2001-04-20       Impact factor: 47.728

Review 6.  Pyrrolysyl-tRNA synthetase: an ordinary enzyme but an outstanding genetic code expansion tool.

Authors:  Wei Wan; Jeffery M Tharp; Wenshe R Liu
Journal:  Biochim Biophys Acta       Date:  2014-03-12

7.  A versatile platform for single- and multiple-unnatural amino acid mutagenesis in Escherichia coli.

Authors:  Abhishek Chatterjee; Sophie B Sun; Jennifer L Furman; Han Xiao; Peter G Schultz
Journal:  Biochemistry       Date:  2013-02-27       Impact factor: 3.162

8.  An expanded genetic code with a functional quadruplet codon.

Authors:  J Christopher Anderson; Ning Wu; Stephen W Santoro; Vishva Lakshman; David S King; Peter G Schultz
Journal:  Proc Natl Acad Sci U S A       Date:  2004-05-11       Impact factor: 11.205

9.  One plasmid selection system for the rapid evolution of aminoacyl-tRNA synthetases.

Authors:  Charles E Melançon; Peter G Schultz
Journal:  Bioorg Med Chem Lett       Date:  2009-04-09       Impact factor: 2.823

10.  Programming cells by multiplex genome engineering and accelerated evolution.

Authors:  Harris H Wang; Farren J Isaacs; Peter A Carr; Zachary Z Sun; George Xu; Craig R Forest; George M Church
Journal:  Nature       Date:  2009-07-26       Impact factor: 49.962

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  41 in total

1.  A "Quenchergenic" Chemoselective Protein Labeling Strategy.

Authors:  Partha Sarathi Addy; Yunan Zheng; James S Italia; Abhishek Chatterjee
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Review 2.  Reprogramming the genetic code.

Authors:  Daniel de la Torre; Jason W Chin
Journal:  Nat Rev Genet       Date:  2020-12-14       Impact factor: 53.242

3.  Electron-deficient p-benzoyl-l-phenylalanine derivatives increase covalent chemical capture yields for protein-protein interactions.

Authors:  Cassandra M Joiner; Meghan E Breen; Anna K Mapp
Journal:  Protein Sci       Date:  2019-04-29       Impact factor: 6.725

4.  Progress toward Eukaryotic Semisynthetic Organisms: Translation of Unnatural Codons.

Authors:  Anne Xiao-Zhou Zhou; Kai Sheng; Aaron W Feldman; Floyd E Romesberg
Journal:  J Am Chem Soc       Date:  2019-12-16       Impact factor: 15.419

5.  A Chemoselective Rapid Azo-Coupling Reaction (CRACR) for Unclickable Bioconjugation.

Authors:  Partha Sarathi Addy; Sarah B Erickson; James S Italia; Abhishek Chatterjee
Journal:  J Am Chem Soc       Date:  2017-08-16       Impact factor: 15.419

Review 6.  Rewriting the Genetic Code.

Authors:  Takahito Mukai; Marc J Lajoie; Markus Englert; Dieter Söll
Journal:  Annu Rev Microbiol       Date:  2017-07-11       Impact factor: 15.500

Review 7.  Upgrading aminoacyl-tRNA synthetases for genetic code expansion.

Authors:  Oscar Vargas-Rodriguez; Anastasia Sevostyanova; Dieter Söll; Ana Crnković
Journal:  Curr Opin Chem Biol       Date:  2018-07-27       Impact factor: 8.822

8.  The ABCs of PTMs.

Authors:  Karl W Barber; Jesse Rinehart
Journal:  Nat Chem Biol       Date:  2018-02-14       Impact factor: 15.040

9.  Resurrecting the Bacterial Tyrosyl-tRNA Synthetase/tRNA Pair for Expanding the Genetic Code of Both E. coli and Eukaryotes.

Authors:  James S Italia; Christopher Latour; Chester J J Wrobel; Abhishek Chatterjee
Journal:  Cell Chem Biol       Date:  2018-08-02       Impact factor: 8.116

10.  Site-specific 5-hydroxytryptophan incorporation into apolipoprotein A-I impairs cholesterol efflux activity and high-density lipoprotein biogenesis.

Authors:  Maryam Zamanian-Daryoush; Valentin Gogonea; Anthony J DiDonato; Jennifer A Buffa; Ibrahim Choucair; Bruce S Levison; Randall A Hughes; Andrew D Ellington; Ying Huang; Xinmin S Li; Joseph A DiDonato; Stanley L Hazen
Journal:  J Biol Chem       Date:  2020-02-25       Impact factor: 5.157

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