Literature DB >> 29354811

Unsupervised Discovery of Spatially-Informed Lung Texture Patterns for Pulmonary Emphysema: The MESA COPD Study.

Jie Yang1, Elsa D Angelini1,2, Pallavi P Balte3, Eric A Hoffman4, John H M Austin5, Benjamin M Smith3,6, Jingkuan Song1, R Graham Barr3,7, Andrew F Laine1.   

Abstract

Unsupervised discovery of pulmonary emphysema subtypes offers the potential for new definitions of emphysema on lung computed tomography (CT) that go beyond the standard subtypes identified on autopsy. Emphysema subtypes can be defined on CT as a variety of textures with certain spatial prevalence. However, most existing approaches for learning emphysema subtypes on CT are limited to texture features, which are sub-optimal due to the lack of spatial information. In this work, we exploit a standardized spatial mapping of the lung and propose a novel framework for combining spatial and texture information to discover spatially-informed lung texture patterns (sLTPs). Our spatial mapping is demonstrated to be a powerful tool to study emphysema spatial locations over different populations. The discovered sLTPs are shown to have high reproducibility, ability to encode standard emphysema subtypes, and significant associations with clinical characteristics.

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Mesh:

Year:  2017        PMID: 29354811      PMCID: PMC5773120          DOI: 10.1007/978-3-319-66182-7_14

Source DB:  PubMed          Journal:  Med Image Comput Comput Assist Interv


  10 in total

1.  Toward automatic regional analysis of pulmonary function using inspiration and expiration thoracic CT.

Authors:  Keelin Murphy; Josien P W Pluim; Eva M van Rikxoort; Pim A de Jong; Bartjan de Hoop; Hester A Gietema; Onno Mets; Marleen de Bruijne; Pechin Lo; Mathias Prokop; Bram van Ginneken
Journal:  Med Phys       Date:  2012-03       Impact factor: 4.071

2.  Shape representation and classification using the poisson equation.

Authors:  Lena Gorelick; Meirav Galun; Eitan Sharon; Ronen Basri; Achi Brandt
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2006-12       Impact factor: 6.226

3.  A texton-based approach for the classification of lung parenchyma in CT images.

Authors:  Mehrdad J Gangeh; Lauge Sørensen; Saher B Shaker; Mohamed S Kamel; Marleen de Bruijne; Marco Loog
Journal:  Med Image Comput Comput Assist Interv       Date:  2010

Review 4.  Maps of random walks on complex networks reveal community structure.

Authors:  Martin Rosvall; Carl T Bergstrom
Journal:  Proc Natl Acad Sci U S A       Date:  2008-01-23       Impact factor: 11.205

5.  Adaptive quantification and longitudinal analysis of pulmonary emphysema with a hidden Markov measure field model.

Authors:  Yrjo Hame; Elsa D Angelini; Eric A Hoffman; R Graham Barr; Andrew F Laine
Journal:  IEEE Trans Med Imaging       Date:  2014-04-15       Impact factor: 10.048

6.  Explaining Radiological Emphysema Subtypes with Unsupervised Texture Prototypes: MESA COPD Study.

Authors:  Jie Yang; Elsa D Angelini; Benjamin M Smith; John H M Austin; Eric A Hoffman; David A Bluemke; R Graham Barr; Andrew F Laine
Journal:  Med Comput Vis Bayesian Graph Models Biomed Imaging (2016)       Date:  2017-07-01

7.  Emphysema Quantification on Cardiac CT Scans Using Hidden Markov Measure Field Model: The MESA Lung Study.

Authors:  Jie Yang; Elsa D Angelini; Pallavi P Balte; Eric A Hoffman; Colin O Wu; Bharath A Venkatesh; R Graham Barr; Andrew F Laine
Journal:  Med Image Comput Comput Assist Interv       Date:  2016-10-02

8.  Pulmonary emphysema subtypes on computed tomography: the MESA COPD study.

Authors:  Benjamin M Smith; John H M Austin; John D Newell; Belinda M D'Souza; Anna Rozenshtein; Eric A Hoffman; Firas Ahmed; R Graham Barr
Journal:  Am J Med       Date:  2013-10-09       Impact factor: 4.965

9.  Unsupervised Discovery of Emphysema Subtypes in a Large Clinical Cohort.

Authors:  Polina Binder; Nematollah K Batmanghelich; Raul San Jose Estepar; Polina Golland
Journal:  Mach Learn Med Imaging       Date:  2016-10-01

10.  Quantitative analysis of pulmonary emphysema using local binary patterns.

Authors:  Lauge Sørensen; Saher B Shaker; Marleen de Bruijne
Journal:  IEEE Trans Med Imaging       Date:  2010-02       Impact factor: 10.048

  10 in total
  5 in total

1.  Incorporating External Information in Tissue Subtyping: A Topic Modeling Approach.

Authors:  Ardavan Saeedi; Payman Yadollahpour; Sumedha Singla; Brian Pollack; William Wells; Frank Sciurba; Kayhan Batmanghelich
Journal:  Proc Mach Learn Res       Date:  2021

2.  Latent traits of lung tissue patterns in former smokers derived by dual channel deep learning in computed tomography images.

Authors:  Frank Li; Jiwoong Choi; Chunrui Zou; John D Newell; Alejandro P Comellas; Chang Hyun Lee; Hongseok Ko; R Graham Barr; Eugene R Bleecker; Christopher B Cooper; Fereidoun Abtin; Igor Barjaktarevic; David Couper; MeiLan Han; Nadia N Hansel; Richard E Kanner; Robert Paine; Ella A Kazerooni; Fernando J Martinez; Wanda O'Neal; Stephen I Rennard; Benjamin M Smith; Prescott G Woodruff; Eric A Hoffman; Ching-Long Lin
Journal:  Sci Rep       Date:  2021-03-01       Impact factor: 4.996

Review 3.  Pulmonary Hypertension in Association with Lung Disease: Quantitative CT and Artificial Intelligence to the Rescue? State-of-the-Art Review.

Authors:  Krit Dwivedi; Michael Sharkey; Robin Condliffe; Johanna M Uthoff; Samer Alabed; Peter Metherall; Haiping Lu; Jim M Wild; Eric A Hoffman; Andrew J Swift; David G Kiely
Journal:  Diagnostics (Basel)       Date:  2021-04-09

Review 4.  Toward a Common Coordinate Framework for the Human Body.

Authors:  Jennifer E Rood; Tim Stuart; Shila Ghazanfar; Tommaso Biancalani; Eyal Fisher; Andrew Butler; Anna Hupalowska; Leslie Gaffney; William Mauck; Gökçen Eraslan; John C Marioni; Aviv Regev; Rahul Satija
Journal:  Cell       Date:  2019-12-12       Impact factor: 41.582

5.  Novel Subtypes of Pulmonary Emphysema Based on Spatially-Informed Lung Texture Learning: The Multi-Ethnic Study of Atherosclerosis (MESA) COPD Study.

Authors:  Jie Yang; Elsa D Angelini; Pallavi P Balte; Eric A Hoffman; John H M Austin; Benjamin M Smith; R Graham Barr; Andrew F Laine
Journal:  IEEE Trans Med Imaging       Date:  2021-11-30       Impact factor: 10.048

  5 in total

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