Literature DB >> 24759984

Adaptive quantification and longitudinal analysis of pulmonary emphysema with a hidden Markov measure field model.

Yrjo Hame, Elsa D Angelini, Eric A Hoffman, R Graham Barr, Andrew F Laine.   

Abstract

The extent of pulmonary emphysema is commonly estimated from CT scans by computing the proportional area of voxels below a predefined attenuation threshold. However, the reliability of this approach is limited by several factors that affect the CT intensity distributions in the lung. This work presents a novel method for emphysema quantification, based on parametric modeling of intensity distributions and a hidden Markov measure field model to segment emphysematous regions. The framework adapts to the characteristics of an image to ensure a robust quantification of emphysema under varying CT imaging protocols, and differences in parenchymal intensity distributions due to factors such as inspiration level. Compared to standard approaches, the presented model involves a larger number of parameters, most of which can be estimated from data, to handle the variability encountered in lung CT scans. The method was applied on a longitudinal data set with 87 subjects and a total of 365 scans acquired with varying imaging protocols. The resulting emphysema estimates had very high intra-subject correlation values. By reducing sensitivity to changes in imaging protocol, the method provides a more robust estimate than standard approaches. The generated emphysema delineations promise advantages for regional analysis of emphysema extent and progression.

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Year:  2014        PMID: 24759984      PMCID: PMC4104988          DOI: 10.1109/TMI.2014.2317520

Source DB:  PubMed          Journal:  IEEE Trans Med Imaging        ISSN: 0278-0062            Impact factor:   10.048


  26 in total

Review 1.  State of the Art. A structural and functional assessment of the lung via multidetector-row computed tomography: phenotyping chronic obstructive pulmonary disease.

Authors:  Eric A Hoffman; Brett A Simon; Geoffrey McLennan
Journal:  Proc Am Thorac Soc       Date:  2006-08

2.  Validation of computed tomographic lung densitometry for monitoring emphysema in alpha1-antitrypsin deficiency.

Authors:  D G Parr; B C Stoel; J Stolk; R A Stockley
Journal:  Thorax       Date:  2006-03-14       Impact factor: 9.139

3.  Texture-based analysis of COPD: a data-driven approach.

Authors:  Lauge Sørensen; Mads Nielsen; Pechin Lo; Haseem Ashraf; Jesper H Pedersen; Marleen de Bruijne
Journal:  IEEE Trans Med Imaging       Date:  2011-08-18       Impact factor: 10.048

4.  Equating quantitative emphysema measurements on different CT image reconstructions.

Authors:  Seth T Bartel; Andrew J Bierhals; Thomas K Pilgram; Cheng Hong; Kenneth B Schechtman; Susan H Conradi; David S Gierada
Journal:  Med Phys       Date:  2011-08       Impact factor: 4.071

5.  Semi-automatic liver tumor segmentation with hidden Markov measure field model and non-parametric distribution estimation.

Authors:  Yrjö Häme; Mika Pollari
Journal:  Med Image Anal       Date:  2011-06-24       Impact factor: 8.545

6.  Comparison of computed density and macroscopic morphometry in pulmonary emphysema.

Authors:  P A Gevenois; V de Maertelaer; P De Vuyst; J Zanen; J C Yernault
Journal:  Am J Respir Crit Care Med       Date:  1995-08       Impact factor: 21.405

7.  Differential MRI analysis for quantification of low grade glioma growth.

Authors:  Elsa D Angelini; Julie Delon; Alpha Boubacar Bah; Laurent Capelle; Emmanuel Mandonnet
Journal:  Med Image Anal       Date:  2011-06-06       Impact factor: 8.545

8.  Robust, standardized quantification of pulmonary emphysema in low dose CT exams.

Authors:  Mario Ceresa; Gorka Bastarrika; Juan P de Torres; Luis M Montuenga; Javier J Zulueta; Carlos Ortiz-de-Solorzano; Arrate Muñoz-Barrutia
Journal:  Acad Radiol       Date:  2011-11       Impact factor: 3.173

9.  "Density mask". An objective method to quantitate emphysema using computed tomography.

Authors:  N L Müller; C A Staples; R R Miller; R T Abboud
Journal:  Chest       Date:  1988-10       Impact factor: 9.410

10.  Report of a workshop: quantitative computed tomography scanning in longitudinal studies of emphysema.

Authors:  J D Newell; J C Hogg; G L Snider
Journal:  Eur Respir J       Date:  2004-05       Impact factor: 16.671

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  12 in total

1.  DERIVATION OF A TEST STATISTIC FOR EMPHYSEMA QUANTIFICATION.

Authors:  Gonzalo Vegas-Sanchez-Ferrero; George Washko; Farbod N Rahaghi; Maria J Ledesma-Carbayo; R San José Estépar
Journal:  Proc IEEE Int Symp Biomed Imaging       Date:  2016-06-16

2.  Emphysema Quantification on Cardiac CT Scans Using Hidden Markov Measure Field Model: The MESA Lung Study.

Authors:  Jie Yang; Elsa D Angelini; Pallavi P Balte; Eric A Hoffman; Colin O Wu; Bharath A Venkatesh; R Graham Barr; Andrew F Laine
Journal:  Med Image Comput Comput Assist Interv       Date:  2016-10-02

3.  Association Between Long-term Exposure to Ambient Air Pollution and Change in Quantitatively Assessed Emphysema and Lung Function.

Authors:  Meng Wang; Carrie Pistenmaa Aaron; Jaime Madrigano; Eric A Hoffman; Elsa Angelini; Jie Yang; Andrew Laine; Thomas M Vetterli; Patrick L Kinney; Paul D Sampson; Lianne E Sheppard; Adam A Szpiro; Sara D Adar; Kipruto Kirwa; Benjamin Smith; David J Lederer; Ana V Diez-Roux; Sverre Vedal; Joel D Kaufman; R Graham Barr
Journal:  JAMA       Date:  2019-08-13       Impact factor: 56.272

4.  Unsupervised Discovery of Spatially-Informed Lung Texture Patterns for Pulmonary Emphysema: The MESA COPD Study.

Authors:  Jie Yang; Elsa D Angelini; Pallavi P Balte; Eric A Hoffman; John H M Austin; Benjamin M Smith; Jingkuan Song; R Graham Barr; Andrew F Laine
Journal:  Med Image Comput Comput Assist Interv       Date:  2017-09-04

5.  Pulmonary Lobe Segmentation With Probabilistic Segmentation of the Fissures and a Groupwise Fissure Prior.

Authors:  Felix J S Bragman; Jamie R McClelland; Joseph Jacob; John R Hurst; David J Hawkes
Journal:  IEEE Trans Med Imaging       Date:  2017-04-18       Impact factor: 10.048

6.  A Robust Emphysema Severity Measure Based on Disease Subtypes.

Authors:  Rola Harmouche; James C Ross; Alejandro A Diaz; George R Washko; Raul San Jose Estepar
Journal:  Acad Radiol       Date:  2016-03-02       Impact factor: 3.173

7.  A Longitudinal Cohort Study of Aspirin Use and Progression of Emphysema-like Lung Characteristics on CT Imaging: The MESA Lung Study.

Authors:  Carrie P Aaron; Joseph E Schwartz; Eric A Hoffman; Elsa Angelini; John H M Austin; Mary Cushman; David R Jacobs; Joel D Kaufman; Andrew Laine; Lewis J Smith; Jie Yang; Karol E Watson; Russell P Tracy; R Graham Barr
Journal:  Chest       Date:  2017-12-12       Impact factor: 9.410

8.  Using a spatial point process framework to characterize lung computed tomography scans.

Authors:  Brian E Vestal; Nichole E Carlson; Raúl San José Estépar; Tasha Fingerlin; Debashis Ghosh; Katerina Kechris; David Lynch
Journal:  Spat Stat       Date:  2018-12-31

9.  GENERATIVE METHOD TO DISCOVER EMPHYSEMA SUBTYPES WITH UNSUPERVISED LEARNING USING LUNG MACROSCOPIC PATTERNS (LMPS): THE MESA COPD STUDY.

Authors:  Jingkuan Song; Jie Yang; Benjamin Smith; Pallavi Balte; Eric A Hoffman; R Graham Barr; Andrew F Laine; Elsa D Angelini
Journal:  Proc IEEE Int Symp Biomed Imaging       Date:  2017-06-19

Review 10.  Toward a Common Coordinate Framework for the Human Body.

Authors:  Jennifer E Rood; Tim Stuart; Shila Ghazanfar; Tommaso Biancalani; Eyal Fisher; Andrew Butler; Anna Hupalowska; Leslie Gaffney; William Mauck; Gökçen Eraslan; John C Marioni; Aviv Regev; Rahul Satija
Journal:  Cell       Date:  2019-12-12       Impact factor: 41.582

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