Literature DB >> 28232959

Unsupervised Discovery of Emphysema Subtypes in a Large Clinical Cohort.

Polina Binder1, Nematollah K Batmanghelich2, Raul San Jose Estepar2, Polina Golland1.   

Abstract

Emphysema is one of the hallmarks of Chronic Obstructive Pulmonary Disorder (COPD), a devastating lung disease often caused by smoking. Emphysema appears on Computed Tomography (CT) scans as a variety of textures that correlate with disease subtypes. It has been shown that the disease subtypes and textures are linked to physiological indicators and prognosis, although neither is well characterized clinically. Most previous computational approaches to modeling emphysema imaging data have focused on supervised classification of lung textures in patches of CT scans. In this work, we describe a generative model that jointly captures heterogeneity of disease subtypes and of the patient population. We also describe a corresponding inference algorithm that simultaneously discovers disease subtypes and population structure in an unsupervised manner. This approach enables us to create image-based descriptors of emphysema beyond those that can be identified through manual labeling of currently defined phenotypes. By applying the resulting algorithm to a large data set, we identify groups of patients and disease subtypes that correlate with distinct physiological indicators.

Entities:  

Year:  2016        PMID: 28232959      PMCID: PMC5317320          DOI: 10.1007/978-3-319-47157-0_22

Source DB:  PubMed          Journal:  Mach Learn Med Imaging


  5 in total

1.  Genetic epidemiology of COPD (COPDGene) study design.

Authors:  Elizabeth A Regan; John E Hokanson; James R Murphy; Barry Make; David A Lynch; Terri H Beaty; Douglas Curran-Everett; Edwin K Silverman; James D Crapo
Journal:  COPD       Date:  2010-02       Impact factor: 2.409

2.  EMPHYSEMA QUANTIFICATION IN A MULTI-SCANNER HRCT COHORT USING LOCAL INTENSITY DISTRIBUTIONS.

Authors:  C S Mendoza; G R Washko; J C Ross; A A Diaz; D A Lynch; J D Crapo; E K Silverman; B Acha; C Serrano; R San José Estépar
Journal:  Proc IEEE Int Symp Biomed Imaging       Date:  2012

3.  Generative Method to Discover Genetically Driven Image Biomarkers.

Authors:  Nematollah K Batmanghelich; Ardavan Saeedi; Michael Cho; Raul San Jose Estepar; Polina Golland
Journal:  Inf Process Med Imaging       Date:  2015

4.  HRCT diagnosis of diffuse parenchymal lung disease: inter-observer variation.

Authors:  Z A Aziz; A U Wells; D M Hansell; G A Bain; S J Copley; S R Desai; S M Ellis; F V Gleeson; S Grubnic; A G Nicholson; S P G Padley; K S Pointon; J H Reynolds; R J H Robertson; M B Rubens
Journal:  Thorax       Date:  2004-06       Impact factor: 9.139

5.  Quantitative stratification of diffuse parenchymal lung diseases.

Authors:  Sushravya Raghunath; Srinivasan Rajagopalan; Ronald A Karwoski; Fabien Maldonado; Tobias Peikert; Teng Moua; Jay H Ryu; Brian J Bartholmai; Richard A Robb
Journal:  PLoS One       Date:  2014-03-27       Impact factor: 3.240

  5 in total
  10 in total

1.  A Likelihood-Free Approach for Characterizing Heterogeneous Diseases in Large-Scale Studies.

Authors:  Jenna Schabdach; William M Wells; Michael Cho; Kayhan N Batmanghelich
Journal:  Inf Process Med Imaging       Date:  2017-05-23

2.  Artificial Intelligence in COPD: New Venues to Study a Complex Disease.

Authors:  Raúl San José Estépar
Journal:  Barc Respir Netw Rev       Date:  2020 May-Dec

3.  Unsupervised Discovery of Spatially-Informed Lung Texture Patterns for Pulmonary Emphysema: The MESA COPD Study.

Authors:  Jie Yang; Elsa D Angelini; Pallavi P Balte; Eric A Hoffman; John H M Austin; Benjamin M Smith; Jingkuan Song; R Graham Barr; Andrew F Laine
Journal:  Med Image Comput Comput Assist Interv       Date:  2017-09-04

4.  Incorporating External Information in Tissue Subtyping: A Topic Modeling Approach.

Authors:  Ardavan Saeedi; Payman Yadollahpour; Sumedha Singla; Brian Pollack; William Wells; Frank Sciurba; Kayhan Batmanghelich
Journal:  Proc Mach Learn Res       Date:  2021

5.  GENERATIVE METHOD TO DISCOVER EMPHYSEMA SUBTYPES WITH UNSUPERVISED LEARNING USING LUNG MACROSCOPIC PATTERNS (LMPS): THE MESA COPD STUDY.

Authors:  Jingkuan Song; Jie Yang; Benjamin Smith; Pallavi Balte; Eric A Hoffman; R Graham Barr; Andrew F Laine; Elsa D Angelini
Journal:  Proc IEEE Int Symp Biomed Imaging       Date:  2017-06-19

Review 6.  Imaging Advances in Chronic Obstructive Pulmonary Disease. Insights from the Genetic Epidemiology of Chronic Obstructive Pulmonary Disease (COPDGene) Study.

Authors:  Surya P Bhatt; George R Washko; Eric A Hoffman; John D Newell; Sandeep Bodduluri; Alejandro A Diaz; Craig J Galban; Edwin K Silverman; Raúl San José Estépar; David A Lynch
Journal:  Am J Respir Crit Care Med       Date:  2019-02-01       Impact factor: 21.405

7.  Filtering Spatial Point Patterns Using Kernel Densities.

Authors:  Brian E Vestal; Nichole E Carlson; Debashis Ghosh
Journal:  Spat Stat       Date:  2020-12-10

Review 8.  Pulmonary Hypertension in Association with Lung Disease: Quantitative CT and Artificial Intelligence to the Rescue? State-of-the-Art Review.

Authors:  Krit Dwivedi; Michael Sharkey; Robin Condliffe; Johanna M Uthoff; Samer Alabed; Peter Metherall; Haiping Lu; Jim M Wild; Eric A Hoffman; Andrew J Swift; David G Kiely
Journal:  Diagnostics (Basel)       Date:  2021-04-09

9.  Characterizing Subjects Exposed to Humidifier Disinfectants Using Computed-Tomography-Based Latent Traits: A Deep Learning Approach.

Authors:  Frank Li; Jiwoong Choi; Xuan Zhang; Prathish K Rajaraman; Chang-Hyun Lee; Hongseok Ko; Kum-Ju Chae; Eun-Kee Park; Alejandro P Comellas; Eric A Hoffman; Ching-Long Lin
Journal:  Int J Environ Res Public Health       Date:  2022-09-20       Impact factor: 4.614

10.  Novel Subtypes of Pulmonary Emphysema Based on Spatially-Informed Lung Texture Learning: The Multi-Ethnic Study of Atherosclerosis (MESA) COPD Study.

Authors:  Jie Yang; Elsa D Angelini; Pallavi P Balte; Eric A Hoffman; John H M Austin; Benjamin M Smith; R Graham Barr; Andrew F Laine
Journal:  IEEE Trans Med Imaging       Date:  2021-11-30       Impact factor: 10.048

  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.