Literature DB >> 18216267

Maps of random walks on complex networks reveal community structure.

Martin Rosvall1, Carl T Bergstrom.   

Abstract

To comprehend the multipartite organization of large-scale biological and social systems, we introduce an information theoretic approach that reveals community structure in weighted and directed networks. We use the probability flow of random walks on a network as a proxy for information flows in the real system and decompose the network into modules by compressing a description of the probability flow. The result is a map that both simplifies and highlights the regularities in the structure and their relationships. We illustrate the method by making a map of scientific communication as captured in the citation patterns of >6,000 journals. We discover a multicentric organization with fields that vary dramatically in size and degree of integration into the network of science. Along the backbone of the network-including physics, chemistry, molecular biology, and medicine-information flows bidirectionally, but the map reveals a directional pattern of citation from the applied fields to the basic sciences.

Mesh:

Year:  2008        PMID: 18216267      PMCID: PMC2234100          DOI: 10.1073/pnas.0706851105

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  13 in total

Review 1.  Community structure in social and biological networks.

Authors:  M Girvan; M E J Newman
Journal:  Proc Natl Acad Sci U S A       Date:  2002-06-11       Impact factor: 11.205

2.  Modularity and extreme edges of the internet.

Authors:  Kasper Astrup Eriksen; Ingve Simonsen; Sergei Maslov; Kim Sneppen
Journal:  Phys Rev Lett       Date:  2003-04-11       Impact factor: 9.161

3.  Mapping knowledge domains.

Authors:  Richard M Shiffrin; Katy Börner
Journal:  Proc Natl Acad Sci U S A       Date:  2004-01-23       Impact factor: 11.205

4.  NETWORKS OF SCIENTIFIC PAPERS.

Authors:  D J PRICE
Journal:  Science       Date:  1965-07-30       Impact factor: 47.728

5.  Fast algorithm for detecting community structure in networks.

Authors:  M E J Newman
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2004-06-18

6.  Finding and evaluating community structure in networks.

Authors:  M E J Newman; M Girvan
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2004-02-26

7.  Functional cartography of complex metabolic networks.

Authors:  Roger Guimerà; Luís A Nunes Amaral
Journal:  Nature       Date:  2005-02-24       Impact factor: 49.962

8.  Uncovering the overlapping community structure of complex networks in nature and society.

Authors:  Gergely Palla; Imre Derényi; Illés Farkas; Tamás Vicsek
Journal:  Nature       Date:  2005-06-09       Impact factor: 49.962

9.  Information-theoretic approach to network modularity.

Authors:  Etay Ziv; Manuel Middendorf; Chris H Wiggins
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2005-04-14

10.  An information-theoretic framework for resolving community structure in complex networks.

Authors:  Martin Rosvall; Carl T Bergstrom
Journal:  Proc Natl Acad Sci U S A       Date:  2007-04-23       Impact factor: 11.205

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  514 in total

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Journal:  Neuropsychol Rev       Date:  2010-10-27       Impact factor: 7.444

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Journal:  Eur Phys J E Soft Matter       Date:  2011-09-29       Impact factor: 1.890

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Journal:  Proc Natl Acad Sci U S A       Date:  2015-10-05       Impact factor: 11.205

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Journal:  Proc Natl Acad Sci U S A       Date:  2015-08-10       Impact factor: 11.205

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Authors:  Maxwell A Bertolero; B T Thomas Yeo; Mark D'Esposito
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-23       Impact factor: 11.205

Review 7.  Dissecting Complex and Multifactorial Nature of Alzheimer's Disease Pathogenesis: a Clinical, Genomic, and Systems Biology Perspective.

Authors:  Puneet Talwar; Juhi Sinha; Sandeep Grover; Chitra Rawat; Suman Kushwaha; Rachna Agarwal; Vibha Taneja; Ritushree Kukreti
Journal:  Mol Neurobiol       Date:  2015-09-09       Impact factor: 5.590

8.  Infomap Bioregions: Interactive Mapping of Biogeographical Regions from Species Distributions.

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Journal:  Syst Biol       Date:  2017-03-01       Impact factor: 15.683

9.  Characterization of digestate microbial community structure following thermophilic anaerobic digestion with varying levels of green and food wastes.

Authors:  Jesus D Fernandez-Bayo; Christopher W Simmons; Jean S VanderGheynst
Journal:  J Ind Microbiol Biotechnol       Date:  2020-10-30       Impact factor: 3.346

10.  Assembly of whole-chromosome pseudomolecules for polyploid plant genomes using outbred mapping populations.

Authors:  Chenxi Zhou; Bode Olukolu; Dorcus C Gemenet; Shan Wu; Wolfgang Gruneberg; Minh Duc Cao; Zhangjun Fei; Zhao-Bang Zeng; Andrew W George; Awais Khan; G Craig Yencho; Lachlan J M Coin
Journal:  Nat Genet       Date:  2020-10-30       Impact factor: 38.330

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