Literature DB >> 29202136

Explaining Radiological Emphysema Subtypes with Unsupervised Texture Prototypes: MESA COPD Study.

Jie Yang1, Elsa D Angelini1,2, Benjamin M Smith3,4, John H M Austin2, Eric A Hoffman5,6, David A Bluemke7, R Graham Barr3,8, Andrew F Laine1.   

Abstract

Pulmonary emphysema is traditionally subcategorized into three subtypes, which have distinct radiological appearances on computed tomography (CT) and can help with the diagnosis of chronic obstructive pulmonary disease (COPD). Automated texture-based quantification of emphysema subtypes has been successfully implemented via supervised learning of these three emphysema subtypes. In this work, we demonstrate that unsupervised learning on a large heterogeneous database of CT scans can generate texture prototypes that are visually homogeneous and distinct, reproducible across subjects, and capable of predicting accurately the three standard radiological subtypes. These texture prototypes enable automated labeling of lung volumes, and open the way to new interpretations of lung CT scans with finer subtyping of emphysema.

Entities:  

Year:  2017        PMID: 29202136      PMCID: PMC5708576          DOI: 10.1007/978-3-319-61188-4_7

Source DB:  PubMed          Journal:  Med Comput Vis Bayesian Graph Models Biomed Imaging (2016)


  9 in total

1.  A texton-based approach for the classification of lung parenchyma in CT images.

Authors:  Mehrdad J Gangeh; Lauge Sørensen; Saher B Shaker; Mohamed S Kamel; Marleen de Bruijne; Marco Loog
Journal:  Med Image Comput Comput Assist Interv       Date:  2010

Review 2.  Three-dimensional solid texture analysis in biomedical imaging: review and opportunities.

Authors:  Adrien Depeursinge; Antonio Foncubierta-Rodriguez; Dimitri Van De Ville; Henning Müller
Journal:  Med Image Anal       Date:  2013-10-22       Impact factor: 8.545

3.  A combined pulmonary-radiology workshop for visual evaluation of COPD: study design, chest CT findings and concordance with quantitative evaluation.

Authors:  R Graham Barr; Eugene A Berkowitz; Francesca Bigazzi; Frederick Bode; Jessica Bon; Russell P Bowler; Caroline Chiles; James D Crapo; Gerard J Criner; Jeffrey L Curtis; Chandra Dass; Asger Dirksen; Mark T Dransfield; Goutham Edula; Leif Erikkson; Adam Friedlander; Maya Galperin-Aizenberg; Warren B Gefter; David S Gierada; Philippe A Grenier; Jonathan Goldin; MeiLan K Han; Nicola A Hanania; Nadia N Hansel; Francine L Jacobson; Hans-Ulrich Kauczor; Vuokko L Kinnula; David A Lipson; David A Lynch; William MacNee; Barry J Make; A James Mamary; Howard Mann; Nathaniel Marchetti; Mario Mascalchi; Geoffrey McLennan; James R Murphy; David Naidich; Hrudaya Nath; John D Newell; Massimo Pistolesi; Elizabeth A Regan; John J Reilly; Robert Sandhaus; Joyce D Schroeder; Frank Sciurba; Saher Shaker; Amir Sharafkhaneh; Edwin K Silverman; Robert M Steiner; Charlton Strange; Nicola Sverzellati; Joseph H Tashjian; Edwin J R van Beek; Lacey Washington; George R Washko; Gloria Westney; Susan A Wood; Prescott G Woodruff
Journal:  COPD       Date:  2012-03-19       Impact factor: 2.409

4.  Change in lung function and morbidity from chronic obstructive pulmonary disease in alpha1-antitrypsin MZ heterozygotes: A longitudinal study of the general population.

Authors:  Morten Dahl; Anne Tybjaerg-Hansen; Peter Lange; Jørgen Vestbo; Børge G Nordestgaard
Journal:  Ann Intern Med       Date:  2002-02-19       Impact factor: 25.391

5.  SPIROMICS Protocol for Multicenter Quantitative Computed Tomography to Phenotype the Lungs.

Authors:  Jered P Sieren; John D Newell; R Graham Barr; Eugene R Bleecker; Nathan Burnette; Elizabeth E Carretta; David Couper; Jonathan Goldin; Junfeng Guo; MeiLan K Han; Nadia N Hansel; Richard E Kanner; Ella A Kazerooni; Fernando J Martinez; Stephen Rennard; Prescott G Woodruff; Eric A Hoffman
Journal:  Am J Respir Crit Care Med       Date:  2016-10-01       Impact factor: 21.405

6.  Pulmonary emphysema subtypes on computed tomography: the MESA COPD study.

Authors:  Benjamin M Smith; John H M Austin; John D Newell; Belinda M D'Souza; Anna Rozenshtein; Eric A Hoffman; Firas Ahmed; R Graham Barr
Journal:  Am J Med       Date:  2013-10-09       Impact factor: 4.965

Review 7.  Evolving concepts in the pathogenesis of chronic obstructive pulmonary disease.

Authors:  S D Shapiro
Journal:  Clin Chest Med       Date:  2000-12       Impact factor: 2.878

8.  MDCT-based 3-D texture classification of emphysema and early smoking related lung pathologies.

Authors:  Ye Xu; Milan Sonka; Geoffrey McLennan; Junfeng Guo; Eric A Hoffman
Journal:  IEEE Trans Med Imaging       Date:  2006-04       Impact factor: 10.048

9.  Quantitative analysis of pulmonary emphysema using local binary patterns.

Authors:  Lauge Sørensen; Saher B Shaker; Marleen de Bruijne
Journal:  IEEE Trans Med Imaging       Date:  2010-02       Impact factor: 10.048

  9 in total
  4 in total

1.  Unsupervised Discovery of Spatially-Informed Lung Texture Patterns for Pulmonary Emphysema: The MESA COPD Study.

Authors:  Jie Yang; Elsa D Angelini; Pallavi P Balte; Eric A Hoffman; John H M Austin; Benjamin M Smith; Jingkuan Song; R Graham Barr; Andrew F Laine
Journal:  Med Image Comput Comput Assist Interv       Date:  2017-09-04

2.  Deep Learning Enables Automatic Classification of Emphysema Pattern at CT.

Authors:  Stephen M Humphries; Aleena M Notary; Juan Pablo Centeno; Matthew J Strand; James D Crapo; Edwin K Silverman; David A Lynch
Journal:  Radiology       Date:  2019-12-03       Impact factor: 11.105

3.  Latent traits of lung tissue patterns in former smokers derived by dual channel deep learning in computed tomography images.

Authors:  Frank Li; Jiwoong Choi; Chunrui Zou; John D Newell; Alejandro P Comellas; Chang Hyun Lee; Hongseok Ko; R Graham Barr; Eugene R Bleecker; Christopher B Cooper; Fereidoun Abtin; Igor Barjaktarevic; David Couper; MeiLan Han; Nadia N Hansel; Richard E Kanner; Robert Paine; Ella A Kazerooni; Fernando J Martinez; Wanda O'Neal; Stephen I Rennard; Benjamin M Smith; Prescott G Woodruff; Eric A Hoffman; Ching-Long Lin
Journal:  Sci Rep       Date:  2021-03-01       Impact factor: 4.996

4.  Novel Subtypes of Pulmonary Emphysema Based on Spatially-Informed Lung Texture Learning: The Multi-Ethnic Study of Atherosclerosis (MESA) COPD Study.

Authors:  Jie Yang; Elsa D Angelini; Pallavi P Balte; Eric A Hoffman; John H M Austin; Benjamin M Smith; R Graham Barr; Andrew F Laine
Journal:  IEEE Trans Med Imaging       Date:  2021-11-30       Impact factor: 10.048

  4 in total

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