Literature DB >> 32023356

Hijacking Translation Initiation for Synthetic Biology.

Jeffery M Tharp1, Natalie Krahn1, Umesh Varshney2, Dieter Söll1,3.   

Abstract

Genetic code expansion (GCE) has revolutionized the field of protein chemistry. Over the past several decades more than 150 different noncanonical amino acids (ncAAs) have been co-translationally installed into proteins within various host organisms. The vast majority of these ncAAs have been incorporated between the start and stop codons within an open reading frame. This requires that the ncAA be able to form a peptide bond at the α-amine, limiting the types of molecules that can be genetically encoded. In contrast, the α-amine of the initiating amino acid is not required for peptide bond formation. Therefore, including the initiator position in GCE allows for co-translational insertion of more diverse molecules that are modified, or completely lacking an α-amine. This review explores various methods which have been used to initiate protein synthesis with diverse molecules both in vitro and in vivo.
© 2020 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  chemical biology; genetic code expansion; noncanonical amino acids; synthetic biology; translation initiation

Mesh:

Substances:

Year:  2020        PMID: 32023356      PMCID: PMC7237318          DOI: 10.1002/cbic.202000017

Source DB:  PubMed          Journal:  Chembiochem        ISSN: 1439-4227            Impact factor:   3.164


  93 in total

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Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-12       Impact factor: 11.205

2.  Incorporation of unnatural non-alpha-amino acids into the N terminus of proteins in a cell-free translation system.

Authors:  Norihito Muranaka; Masanori Miura; Hikaru Taira; Takahiro Hohsaka
Journal:  Chembiochem       Date:  2007-09-24       Impact factor: 3.164

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Journal:  Methods Mol Biol       Date:  1998

4.  Purification, characterization, and inhibition of peptide deformylase from Escherichia coli.

Authors:  P T Rajagopalan; A Datta; D Pei
Journal:  Biochemistry       Date:  1997-11-11       Impact factor: 3.162

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Authors:  M J Wilson; D L Hatfield; L A Poirier
Journal:  FEBS Lett       Date:  1981-06-01       Impact factor: 4.124

6.  Directed Evolution of a Cyclized Peptoid-Peptide Chimera against a Cell-Free Expressed Protein and Proteomic Profiling of the Interacting Proteins to Create a Protein-Protein Interaction Inhibitor.

Authors:  Takashi Kawakami; Koji Ogawa; Tomohisa Hatta; Naoki Goshima; Tohru Natsume
Journal:  ACS Chem Biol       Date:  2016-03-24       Impact factor: 5.100

7.  In vivo half-life of a protein is a function of its amino-terminal residue.

Authors:  A Bachmair; D Finley; A Varshavsky
Journal:  Science       Date:  1986-10-10       Impact factor: 47.728

8.  Structural and sequence elements important for recognition of Escherichia coli formylmethionine tRNA by methionyl-tRNA transformylase are clustered in the acceptor stem.

Authors:  C P Lee; B L Seong; U L RajBhandary
Journal:  J Biol Chem       Date:  1991-09-25       Impact factor: 5.157

9.  Measurements of translation initiation from all 64 codons in E. coli.

Authors:  Ariel Hecht; Jeff Glasgow; Paul R Jaschke; Lukmaan A Bawazer; Matthew S Munson; Jennifer R Cochran; Drew Endy; Marc Salit
Journal:  Nucleic Acids Res       Date:  2017-04-20       Impact factor: 16.971

10.  Sequence of a 1.26-kb DNA fragment containing the structural gene for E.coli initiation factor IF3: presence of an AUU initiator codon.

Authors:  C Sacerdot; G Fayat; P Dessen; M Springer; J A Plumbridge; M Grunberg-Manago; S Blanquet
Journal:  EMBO J       Date:  1982       Impact factor: 11.598

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  3 in total

1.  Genetic Encoding of Three Distinct Noncanonical Amino Acids Using Reprogrammed Initiator and Nonsense Codons.

Authors:  Jeffery M Tharp; Oscar Vargas-Rodriguez; Alanna Schepartz; Dieter Söll
Journal:  ACS Chem Biol       Date:  2021-03-16       Impact factor: 5.100

Review 2.  The Potential of a Protein Model Synthesized Absent of Methionine.

Authors:  Ronald J Savino; Bartosz Kempisty; Paul Mozdziak
Journal:  Molecules       Date:  2022-06-08       Impact factor: 4.927

3.  In vitro-Constructed Ribosomes Enable Multi-site Incorporation of Noncanonical Amino Acids into Proteins.

Authors:  Yi Liu; Roderick G Davis; Paul M Thomas; Neil L Kelleher; Michael C Jewett
Journal:  Biochemistry       Date:  2021-01-11       Impact factor: 3.162

  3 in total

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