Literature DB >> 29180595

ALKBH10B Is an RNA N6-Methyladenosine Demethylase Affecting Arabidopsis Floral Transition.

Hong-Chao Duan1, Lian-Huan Wei1, Chi Zhang1, Ye Wang1, Lin Chen1, Zhike Lu1, Peng R Chen1, Chuan He2,3,4, Guifang Jia2,5.   

Abstract

N6-methyladenosine (m6A) is the most abundant, internal, posttranscriptional modification in mRNA among all higher eukaryotes. In mammals, this modification is reversible and plays broad roles in the regulation of mRNA metabolism and processing. Despite its importance, previous studies on the role and mechanism of m6A methylation in Arabidopsis thaliana have been limited. Here, we report that ALKBH10B is a demethylase that oxidatively reverses m6A methylation in mRNA in vitro and in vivo. Depletion of ALKBH10B in the alkbh10b mutant delays flowering and represses vegetative growth. Complementation with wild-type ALKBH10B, but not a catalytically inactive mutant (ALKBH10B H366A/E368A), rescues these effects in alkbh10b-1 mutant plants, suggesting the observed phenotypes are controlled by the catalytic action of ALKBH10B We show that ALKBH10B-mediated mRNA demethylation affects the stability of target transcripts, thereby influencing floral transition. We identified 1190 m6A hypermethylated transcripts in the alkbh10b-1 mutant involved in plant development. The discovery and characterization of the archetypical RNA demethylase in Arabidopsis sheds light on the occurrence and functional role(s) of reversible mRNA methylation in plants and defines the role of m6A RNA modification in Arabidopsis floral transition.
© 2017 American Society of Plant Biologists. All rights reserved.

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Year:  2017        PMID: 29180595      PMCID: PMC5757257          DOI: 10.1105/tpc.16.00912

Source DB:  PubMed          Journal:  Plant Cell        ISSN: 1040-4651            Impact factor:   11.277


  50 in total

1.  FD, a bZIP protein mediating signals from the floral pathway integrator FT at the shoot apex.

Authors:  Mitsutomo Abe; Yasushi Kobayashi; Sumiko Yamamoto; Yasufumi Daimon; Ayako Yamaguchi; Yoko Ikeda; Harutaka Ichinoki; Michitaka Notaguchi; Koji Goto; Takashi Araki
Journal:  Science       Date:  2005-08-12       Impact factor: 47.728

2.  N(6)-methyladenosine Modulates Messenger RNA Translation Efficiency.

Authors:  Xiao Wang; Boxuan Simen Zhao; Ian A Roundtree; Zhike Lu; Dali Han; Honghui Ma; Xiaocheng Weng; Kai Chen; Hailing Shi; Chuan He
Journal:  Cell       Date:  2015-06-04       Impact factor: 41.582

3.  m(6)A RNA modification controls cell fate transition in mammalian embryonic stem cells.

Authors:  Pedro J Batista; Benoit Molinie; Jinkai Wang; Kun Qu; Jiajing Zhang; Lingjie Li; Donna M Bouley; Ernesto Lujan; Bahareh Haddad; Kaveh Daneshvar; Ava C Carter; Ryan A Flynn; Chan Zhou; Kok-Seong Lim; Peter Dedon; Marius Wernig; Alan C Mullen; Yi Xing; Cosmas C Giallourakis; Howard Y Chang
Journal:  Cell Stem Cell       Date:  2014-10-16       Impact factor: 24.633

4.  Comprehensive analysis of mRNA methylation reveals enrichment in 3' UTRs and near stop codons.

Authors:  Kate D Meyer; Yogesh Saletore; Paul Zumbo; Olivier Elemento; Christopher E Mason; Samie R Jaffrey
Journal:  Cell       Date:  2012-05-17       Impact factor: 41.582

5.  5' UTR m(6)A Promotes Cap-Independent Translation.

Authors:  Kate D Meyer; Deepak P Patil; Jun Zhou; Alexandra Zinoviev; Maxim A Skabkin; Olivier Elemento; Tatyana V Pestova; Shu-Bing Qian; Samie R Jaffrey
Journal:  Cell       Date:  2015-10-22       Impact factor: 41.582

6.  Genome-wide insertional mutagenesis of Arabidopsis thaliana.

Authors:  José M Alonso; Anna N Stepanova; Thomas J Leisse; Christopher J Kim; Huaming Chen; Paul Shinn; Denise K Stevenson; Justin Zimmerman; Pascual Barajas; Rosa Cheuk; Carmelita Gadrinab; Collen Heller; Albert Jeske; Eric Koesema; Cristina C Meyers; Holly Parker; Lance Prednis; Yasser Ansari; Nathan Choy; Hashim Deen; Michael Geralt; Nisha Hazari; Emily Hom; Meagan Karnes; Celene Mulholland; Ral Ndubaku; Ian Schmidt; Plinio Guzman; Laura Aguilar-Henonin; Markus Schmid; Detlef Weigel; David E Carter; Trudy Marchand; Eddy Risseeuw; Debra Brogden; Albana Zeko; William L Crosby; Charles C Berry; Joseph R Ecker
Journal:  Science       Date:  2003-08-01       Impact factor: 47.728

7.  ALKBH5 is a mammalian RNA demethylase that impacts RNA metabolism and mouse fertility.

Authors:  Guanqun Zheng; John Arne Dahl; Yamei Niu; Peter Fedorcsak; Chun-Min Huang; Charles J Li; Cathrine B Vågbø; Yue Shi; Wen-Ling Wang; Shu-Hui Song; Zhike Lu; Ralph P G Bosmans; Qing Dai; Ya-Juan Hao; Xin Yang; Wen-Ming Zhao; Wei-Min Tong; Xiu-Jie Wang; Florian Bogdan; Kari Furu; Ye Fu; Guifang Jia; Xu Zhao; Jun Liu; Hans E Krokan; Arne Klungland; Yun-Gui Yang; Chuan He
Journal:  Mol Cell       Date:  2012-11-21       Impact factor: 17.970

8.  The immunophilin-interacting protein AtFIP37 from Arabidopsis is essential for plant development and is involved in trichome endoreduplication.

Authors:  Laurent Vespa; Gilles Vachon; Frédéric Berger; Daniel Perazza; Jean-Denis Faure; Michel Herzog
Journal:  Plant Physiol       Date:  2004-03-26       Impact factor: 8.340

9.  N6-methyladenosine in nuclear RNA is a major substrate of the obesity-associated FTO.

Authors:  Guifang Jia; Ye Fu; Xu Zhao; Qing Dai; Guanqun Zheng; Ying Yang; Chengqi Yi; Tomas Lindahl; Tao Pan; Yun-Gui Yang; Chuan He
Journal:  Nat Chem Biol       Date:  2011-10-16       Impact factor: 15.040

10.  Adenosine Methylation in Arabidopsis mRNA is Associated with the 3' End and Reduced Levels Cause Developmental Defects.

Authors:  Zsuzsanna Bodi; Silin Zhong; Surbhi Mehra; Jie Song; Neil Graham; Hongying Li; Sean May; Rupert George Fray
Journal:  Front Plant Sci       Date:  2012-03-23       Impact factor: 5.753

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  70 in total

Review 1.  Small changes, big implications: The impact of m6A RNA methylation on gene expression in pluripotency and development.

Authors:  Adam M Heck; Carol J Wilusz
Journal:  Biochim Biophys Acta Gene Regul Mech       Date:  2019-07-17       Impact factor: 4.490

2.  Occurrence and Functions of m6A and Other Covalent Modifications in Plant mRNA.

Authors:  Laura Arribas-Hernández; Peter Brodersen
Journal:  Plant Physiol       Date:  2019-11-20       Impact factor: 8.340

3.  Epitranscriptomics and Flowering: mRNA Methylation/Demethylation Regulates Flowering Time.

Authors:  Nancy R Hofmann
Journal:  Plant Cell       Date:  2017-12-04       Impact factor: 11.277

Review 4.  A molecular-level perspective on the frequency, distribution, and consequences of messenger RNA modifications.

Authors:  Joshua D Jones; Jeremy Monroe; Kristin S Koutmou
Journal:  Wiley Interdiscip Rev RNA       Date:  2020-01-21       Impact factor: 9.957

5.  Evolution of the RNA N 6-Methyladenosine Methylome Mediated by Genomic Duplication.

Authors:  Zhenyan Miao; Ting Zhang; Yuhong Qi; Jie Song; Zhaoxue Han; Chuang Ma
Journal:  Plant Physiol       Date:  2019-08-13       Impact factor: 8.340

6.  INCURVATA11 and CUPULIFORMIS2 Are Redundant Genes That Encode Epigenetic Machinery Components in Arabidopsis.

Authors:  Eduardo Mateo-Bonmatí; David Esteve-Bruna; Lucía Juan-Vicente; Riad Nadi; Héctor Candela; Francisca María Lozano; María Rosa Ponce; José Manuel Pérez-Pérez; José Luis Micol
Journal:  Plant Cell       Date:  2018-06-18       Impact factor: 11.277

7.  Natural Variation in RNA m6A Methylation and Its Relationship with Translational Status.

Authors:  Jin-Hong Luo; Ye Wang; Min Wang; Li-Yuan Zhang; Hui-Ru Peng; Yu-Yi Zhou; Gui-Fang Jia; Yan He
Journal:  Plant Physiol       Date:  2019-10-07       Impact factor: 8.340

8.  The m6A Reader ECT2 Controls Trichome Morphology by Affecting mRNA Stability in Arabidopsis.

Authors:  Lian-Huan Wei; Peizhe Song; Ye Wang; Zhike Lu; Qian Tang; Qiong Yu; Yu Xiao; Xiao Zhang; Hong-Chao Duan; Guifang Jia
Journal:  Plant Cell       Date:  2018-04-30       Impact factor: 11.277

9.  RFAthM6A: a new tool for predicting m6A sites in Arabidopsis thaliana.

Authors:  Xiaofeng Wang; Renxiang Yan
Journal:  Plant Mol Biol       Date:  2018-01-16       Impact factor: 4.076

10.  Genome-wide identification and characterization of YTH domain-containing genes, encoding the m6A readers, and their expression in tomato.

Authors:  Shuangqin Yin; Qiujing Ao; Caiyun Tan; Yingwu Yang
Journal:  Plant Cell Rep       Date:  2021-06-03       Impact factor: 4.570

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