Literature DB >> 31748418

Occurrence and Functions of m6A and Other Covalent Modifications in Plant mRNA.

Laura Arribas-Hernández1, Peter Brodersen2.   

Abstract

Posttranscriptional control of gene expression is indispensable for the execution of developmental programs and environmental adaptation. Among the many cellular mechanisms that regulate mRNA fate, covalent nucleotide modification has emerged as a major way of controlling the processing, localization, stability, and translatability of mRNAs. This powerful mechanism is conserved across eukaryotes and controls the cellular events that lead to development and growth. As in other eukaryotes, N 6-methylation of adenosine is the most abundant and best studied mRNA modification in flowering plants. It is essential for embryonic and postembryonic plant development and it affects growth rate and stress responses, including susceptibility to plant RNA viruses. Although the mRNA modification field is young, the intense interest triggered by its involvement in stem cell differentiation and cancer has led to rapid advances in understanding how mRNA modifications control gene expression in mammalian systems. An equivalent effort from plant molecular biologists has been lagging behind, but recent work in Arabidopsis (Arabidopsis thaliana) and other plant species is starting to give insights into how this essential layer of posttranscriptional regulation works in plants, and both similarities and differences with other eukaryotes are emerging. In this Update, we summarize, connect, and evaluate the experimental work that supports our current knowledge of the biochemistry, molecular mechanisms, and biological functions of mRNA modifications in plants. We devote particular attention to N 6-methylation of adenosine and attempt to place the knowledge gained from plant studies within the context of a more general framework derived from studies in other eukaryotes.
© 2020 American Society of Plant Biologists. All Rights Reserved.

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Year:  2019        PMID: 31748418      PMCID: PMC6945878          DOI: 10.1104/pp.19.01156

Source DB:  PubMed          Journal:  Plant Physiol        ISSN: 0032-0889            Impact factor:   8.340


  168 in total

1.  Structural Basis for the Discriminative Recognition of N6-Methyladenosine RNA by the Human YT521-B Homology Domain Family of Proteins.

Authors:  Chao Xu; Ke Liu; Hazem Ahmed; Peter Loppnau; Matthieu Schapira; Jinrong Min
Journal:  J Biol Chem       Date:  2015-08-28       Impact factor: 5.157

2.  5'-Terminal and internal methylated nucleotide sequences in HeLa cell mRNA.

Authors:  C M Wei; A Gershowitz; B Moss
Journal:  Biochemistry       Date:  1976-01-27       Impact factor: 3.162

3.  The YTH domain is a novel RNA binding domain.

Authors:  Zhaiyi Zhang; Dominik Theler; Katarzyna H Kaminska; Michael Hiller; Pierre de la Grange; Rainer Pudimat; Ilona Rafalska; Bettina Heinrich; Janusz M Bujnicki; Frédéric H-T Allain; Stefan Stamm
Journal:  J Biol Chem       Date:  2010-02-18       Impact factor: 5.157

4.  m6A RNA Degradation Products Are Catabolized by an Evolutionarily Conserved N6-Methyl-AMP Deaminase in Plant and Mammalian Cells.

Authors:  Mingjia Chen; Mounashree J Urs; Ismael Sánchez-González; Monilola A Olayioye; Marco Herde; Claus-Peter Witte
Journal:  Plant Cell       Date:  2018-06-08       Impact factor: 11.277

5.  Ythdc2 is an N6-methyladenosine binding protein that regulates mammalian spermatogenesis.

Authors:  Phillip J Hsu; Yunfei Zhu; Honghui Ma; Yueshuai Guo; Xiaodan Shi; Yuanyuan Liu; Meijie Qi; Zhike Lu; Hailing Shi; Jianying Wang; Yiwei Cheng; Guanzheng Luo; Qing Dai; Mingxi Liu; Xuejiang Guo; Jiahao Sha; Bin Shen; Chuan He
Journal:  Cell Res       Date:  2017-08-15       Impact factor: 25.617

Review 6.  Formaldehyde crosslinking: a tool for the study of chromatin complexes.

Authors:  Elizabeth A Hoffman; Brian L Frey; Lloyd M Smith; David T Auble
Journal:  J Biol Chem       Date:  2015-09-09       Impact factor: 5.157

7.  The m6A Reader ECT2 Controls Trichome Morphology by Affecting mRNA Stability in Arabidopsis.

Authors:  Lian-Huan Wei; Peizhe Song; Ye Wang; Zhike Lu; Qian Tang; Qiong Yu; Yu Xiao; Xiao Zhang; Hong-Chao Duan; Guifang Jia
Journal:  Plant Cell       Date:  2018-04-30       Impact factor: 11.277

8.  The conserved RNA helicase YTHDC2 regulates the transition from proliferation to differentiation in the germline.

Authors:  Alexis S Bailey; Pedro J Batista; Rebecca S Gold; Y Grace Chen; Dirk G de Rooij; Howard Y Chang; Margaret T Fuller
Journal:  Elife       Date:  2017-10-31       Impact factor: 8.140

9.  Zc3h13/Flacc is required for adenosine methylation by bridging the mRNA-binding factor Rbm15/Spenito to the m6A machinery component Wtap/Fl(2)d.

Authors:  Philip Knuckles; Tina Lence; Irmgard U Haussmann; Dominik Jacob; Nastasja Kreim; Sarah H Carl; Irene Masiello; Tina Hares; Rodrigo Villaseñor; Daniel Hess; Miguel A Andrade-Navarro; Marco Biggiogera; Mark Helm; Matthias Soller; Marc Bühler; Jean-Yves Roignant
Journal:  Genes Dev       Date:  2018-03-13       Impact factor: 11.361

10.  Accurate detection of m6A RNA modifications in native RNA sequences.

Authors:  Huanle Liu; Oguzhan Begik; Morghan C Lucas; Jose Miguel Ramirez; Christopher E Mason; David Wiener; Schraga Schwartz; John S Mattick; Martin A Smith; Eva Maria Novoa
Journal:  Nat Commun       Date:  2019-09-09       Impact factor: 14.919

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  26 in total

1.  The Dynamic Kaleidoscope of RNA Biology in Plants.

Authors:  Julia Bailey-Serres; Jixian Zhai; Motoaki Seki
Journal:  Plant Physiol       Date:  2020-01       Impact factor: 8.340

2.  A photoregulatory mechanism of the circadian clock in Arabidopsis.

Authors:  Xu Wang; Bochen Jiang; Lianfeng Gu; Yadi Chen; Manuel Mora; Mulangma Zhu; Eliace Noory; Qin Wang; Chentao Lin
Journal:  Nat Plants       Date:  2021-10-14       Impact factor: 15.793

3.  Recent Acquisition of Functional m6A RNA Demethylase Domain in Orchid Ty3/Gypsy Elements.

Authors:  Luis Alvarado-Marchena; Mireya Martínez-Pérez; Frederic Aparicio; Vicente Pallas; Florian Maumus
Journal:  Front Plant Sci       Date:  2022-07-04       Impact factor: 6.627

Review 4.  Plant Immune Mechanisms: From Reductionistic to Holistic Points of View.

Authors:  Jie Zhang; Gitta Coaker; Jian-Min Zhou; Xinnian Dong
Journal:  Mol Plant       Date:  2020-09-08       Impact factor: 13.164

Review 5.  RNA methylation in chloroplasts or mitochondria in plants.

Authors:  Stefano Manduzio; Hunseung Kang
Journal:  RNA Biol       Date:  2021-04-05       Impact factor: 4.652

Review 6.  Roles of Organellar RNA-Binding Proteins in Plant Growth, Development, and Abiotic Stress Responses.

Authors:  Kwanuk Lee; Hunseung Kang
Journal:  Int J Mol Sci       Date:  2020-06-26       Impact factor: 5.923

7.  The dynamics of N6-methyladenine RNA modification in interactions between rice and plant viruses.

Authors:  Kun Zhang; Xinjian Zhuang; Zhuozhuo Dong; Kai Xu; Xijun Chen; Fang Liu; Zhen He
Journal:  Genome Biol       Date:  2021-06-24       Impact factor: 13.583

8.  Recurrent requirement for the m6A-ECT2/ECT3/ECT4 axis in the control of cell proliferation during plant organogenesis.

Authors:  Laura Arribas-Hernández; Sara Simonini; Mathias Henning Hansen; Esther Botterweg Paredes; Simon Bressendorff; Yang Dong; Lars Østergaard; Peter Brodersen
Journal:  Development       Date:  2020-07-24       Impact factor: 6.862

Review 9.  Function and evolution of RNA N6-methyladenosine modification.

Authors:  Zhi-Man Zhu; Fu-Chun Huo; Dong-Sheng Pei
Journal:  Int J Biol Sci       Date:  2020-04-15       Impact factor: 6.580

Review 10.  N6 -methyladenosine (m6A) RNA modification in human cancer.

Authors:  Fu-Chun Huo; Zhi-Man Zhu; Dong-Sheng Pei
Journal:  Cell Prolif       Date:  2020-10-07       Impact factor: 8.755

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