Literature DB >> 29134598

Annotation of Bacteriophage Genome Sequences Using DNA Master: An Overview.

Welkin H Pope1, Deborah Jacobs-Sera2.   

Abstract

Current sequencing technologies allow for the rapid and inexpensive sequencing of complete bacteriophage genomes, using small quantities of nucleic acid as starting material. Determination of the location and function of the gene features within the genome sequence, or annotation, is a necessary next step prior to submission to a public database, publication in a scientific journal, or advanced comparative genomic and proteomic studies. Gene prediction can be largely accomplished through the use of several freely available programs. However, manual inspection and refinement is essential to the production of the most accurate genome annotations. Here, we describe an overview of the annotation of a bacteriophage genome sequence using the freely available program DNA Master.

Entities:  

Keywords:  Annotation; Bacteriophage; DNA master; Genome; Sequence analysis

Mesh:

Substances:

Year:  2018        PMID: 29134598     DOI: 10.1007/978-1-4939-7343-9_16

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  30 in total

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3.  Complete Genome Sequences of the Novel Cluster BP Phages Infecting Streptomyces sanglieri, AxeJC, Cumberbatch, Eastland, Eklok, HFrancette, Ignacio, Piccadilly, and Vondra.

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6.  Isolation and Characterization of vB_MsmS_Celfi: A New Mycobacterium tuberculosis Bacteriophage.

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Journal:  Phage (New Rochelle)       Date:  2021-03-17

7.  Complete Genome Sequences of Mycobacterium smegmatis Phages MelsMeow, Yorick, Virgeve, and Mikro.

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8.  Complete Genome Sequence of Cluster C Mycobacteriophage McGee.

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9.  Long-run bacteria-phage coexistence dynamics under natural habitat conditions in an environmental biotechnology system.

Authors:  Leandro D Guerrero; María V Pérez; Esteban Orellana; Mariana Piuri; Cecilia Quiroga; Leonardo Erijman
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