Literature DB >> 36073918

Complete Genome Sequence of Cluster C Mycobacteriophage McGee.

Imade Y Nsa1, Ayodeji A Odunsi1, Chioma V Okorie1, Seun D Bamisaye1, Rashidat O Abass1, Dennis O Amadi1, Joshua E Ebitigha1, Oluwafemi O Kadiri1, Temidayo M Makinwa1, Solape O Olaiya1, Josephine O Oluwafemi1, Tomilayo L Owoeye1, Zainab A Sekoni1, Abisoye F Olubajo1, Tenny O G Egwuatu1, Ganiyu O Oyetibo1, Matthew O Ilori1,2.   

Abstract

Mycobacteriophage McGee is a myovirus isolated from a wet soil sample collected at Manassas, VA, using Mycobacterium smegmatis mc2155. McGee has a genome 156,008 bp long, containing 237 protein-coding genes, 31 tRNA genes, and 1 transfer-messenger RNA (tmRNA) gene. McGee shares high gene content similarity to phages in actinobacteriophage cluster C1.

Entities:  

Year:  2022        PMID： 36073918      PMCID： PMC9583779          DOI： 10.1128/mra.00768-22

Source DB:  PubMed          Journal:  Microbiol Resour Announc        ISSN： 2576-098X


  19 in total

1.  Physicochemical factors for discriminating between soluble and membrane proteins: hydrophobicity of helical segments and protein length.

Authors:  S Mitaku; T Hirokawa
Journal:  Protein Eng       Date:  1999-11

2.  Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes.

Authors:  A Krogh; B Larsson; G von Heijne; E L Sonnhammer
Journal:  J Mol Biol       Date:  2001-01-19       Impact factor: 5.469

3.  ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences.

Authors:  Dean Laslett; Bjorn Canback
Journal:  Nucleic Acids Res       Date:  2004-01-02       Impact factor: 16.971

4.  Identifying bacterial genes and endosymbiont DNA with Glimmer.

Authors:  Arthur L Delcher; Kirsten A Bratke; Edwin C Powers; Steven L Salzberg
Journal:  Bioinformatics       Date:  2007-01-19       Impact factor: 6.937

5.  SOSUI: classification and secondary structure prediction system for membrane proteins.

Authors:  T Hirokawa; S Boon-Chieng; S Mitaku
Journal:  Bioinformatics       Date:  1998       Impact factor: 6.937

6.  Annotation of Bacteriophage Genome Sequences Using DNA Master: An Overview.

Authors:  Welkin H Pope; Deborah Jacobs-Sera
Journal:  Methods Mol Biol       Date:  2018

7.  Phamerator: a bioinformatic tool for comparative bacteriophage genomics.

Authors:  Steven G Cresawn; Matt Bogel; Nathan Day; Deborah Jacobs-Sera; Roger W Hendrix; Graham F Hatfull
Journal:  BMC Bioinformatics       Date:  2011-10-12       Impact factor: 3.169

8.  GeneMark: web software for gene finding in prokaryotes, eukaryotes and viruses.

Authors:  John Besemer; Mark Borodovsky
Journal:  Nucleic Acids Res       Date:  2005-07-01       Impact factor: 16.971

9.  The HHpred interactive server for protein homology detection and structure prediction.

Authors:  Johannes Söding; Andreas Biegert; Andrei N Lupas
Journal:  Nucleic Acids Res       Date:  2005-07-01       Impact factor: 16.971

10.  Bacteriophages of Gordonia spp. Display a Spectrum of Diversity and Genetic Relationships.

Authors:  Welkin H Pope; Travis N Mavrich; Rebecca A Garlena; Carlos A Guerrero-Bustamante; Deborah Jacobs-Sera; Matthew T Montgomery; Daniel A Russell; Marcie H Warner; Graham F Hatfull
Journal:  mBio       Date:  2017-08-15       Impact factor: 7.867
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