Literature DB >> 36154149

Complete Genome Sequences of Mycobacterium smegmatis Phages MelsMeow, Yorick, Virgeve, and Mikro.

Victoria J Frost1, Jada E Fogle1, Ryan N Harris1, Brooke Jewell1, Kaylee E Mills1, Jessica E Morgan1, Precious T Thompson1, Emi Umemoto1, Kristi M Westover1.   

Abstract

Mycobacterium phages Mikro, Yorick, Virgeve, and MelsMeow were isolated from soil in Rock Hill, South Carolina. Mikro is a myovirus with a comparatively large genome of 157,166 bp. The remainder are siphoviruses with genome lengths ranging from 59,227 bp to 68,563 bp. All phages were isolated on Mycobacterium smegmatis.

Entities:  

Year:  2022        PMID： 36154149      PMCID： PMC9584337          DOI： 10.1128/mra.00758-22

Source DB:  PubMed          Journal:  Microbiol Resour Announc        ISSN： 2576-098X


  14 in total

1.  ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences.

Authors:  Dean Laslett; Bjorn Canback
Journal:  Nucleic Acids Res       Date:  2004-01-02       Impact factor: 16.971

2.  Basic local alignment search tool.

Authors:  S F Altschul; W Gish; W Miller; E W Myers; D J Lipman
Journal:  J Mol Biol       Date:  1990-10-05       Impact factor: 5.469

3.  Identifying bacterial genes and endosymbiont DNA with Glimmer.

Authors:  Arthur L Delcher; Kirsten A Bratke; Edwin C Powers; Steven L Salzberg
Journal:  Bioinformatics       Date:  2007-01-19       Impact factor: 6.937

4.  Consed: a graphical editor for next-generation sequencing.

Authors:  David Gordon; Phil Green
Journal:  Bioinformatics       Date:  2013-08-31       Impact factor: 6.937

5.  Phamerator: a bioinformatic tool for comparative bacteriophage genomics.

Authors:  Steven G Cresawn; Matt Bogel; Nathan Day; Deborah Jacobs-Sera; Roger W Hendrix; Graham F Hatfull
Journal:  BMC Bioinformatics       Date:  2011-10-12       Impact factor: 3.169

6.  Host and pathogen response to bacteriophage engineered against Mycobacterium abscessus lung infection.

Authors:  Jerry A Nick; Rebekah M Dedrick; Alice L Gray; Eszter K Vladar; Bailey E Smith; Krista G Freeman; Kenneth C Malcolm; L Elaine Epperson; Nabeeh A Hasan; Jo Hendrix; Kimberly Callahan; Kendra Walton; Brian Vestal; Emily Wheeler; Noel M Rysavy; Katie Poch; Silvia Caceres; Valerie K Lovell; Katherine B Hisert; Vinicius Calado de Moura; Delphi Chatterjee; Prithwiraj De; Natalia Weakly; Stacey L Martiniano; David A Lynch; Charles L Daley; Michael Strong; Fan Jia; Graham F Hatfull; Rebecca M Davidson
Journal:  Cell       Date:  2022-05-13       Impact factor: 66.850

7.  GeneMark: web software for gene finding in prokaryotes, eukaryotes and viruses.

Authors:  John Besemer; Mark Borodovsky
Journal:  Nucleic Acids Res       Date:  2005-07-01       Impact factor: 16.971

8.  The HHpred interactive server for protein homology detection and structure prediction.

Authors:  Johannes Söding; Andreas Biegert; Andrei N Lupas
Journal:  Nucleic Acids Res       Date:  2005-07-01       Impact factor: 16.971

9.  tRNAscan-SE On-line: integrating search and context for analysis of transfer RNA genes.

Authors:  Todd M Lowe; Patricia P Chan
Journal:  Nucleic Acids Res       Date:  2016-05-12       Impact factor: 16.971

10.  Bacteriophages of Gordonia spp. Display a Spectrum of Diversity and Genetic Relationships.

Authors:  Welkin H Pope; Travis N Mavrich; Rebecca A Garlena; Carlos A Guerrero-Bustamante; Deborah Jacobs-Sera; Matthew T Montgomery; Daniel A Russell; Marcie H Warner; Graham F Hatfull
Journal:  mBio       Date:  2017-08-15       Impact factor: 7.867
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