Literature DB >> 36173193

Complete Genome Sequences of Cluster A Mycobacteriophages Kenmech and Peterson and Cluster F Mycobacteriophage Rockne.

Imade Y Nsa1, Ayodeji A Odunsi1, Seun D Bamisaye1, Hauwa J Kamselem1, Shina O Abidoye1, Abisola C Jegede1, John O Ayodele1, Tenny O G Egwuatu1, Ganiyu O Oyetibo1, Matthew O Ilori1,2.   

Abstract

Kenmech, Peterson, and Rockne are bacteriophages that infect Mycobacterium smegmatis mc2 155. Both Kenmech and Peterson genomes are ~52 kbp long and contain 1 tRNA as well as 92 and 89 protein-coding genes, respectively. Rockne has a 56,704-bp genome with 108 protein-coding genes and no tRNA.

Entities:  

Year:  2022        PMID: 36173193      PMCID: PMC9584312          DOI: 10.1128/mra.00908-22

Source DB:  PubMed          Journal:  Microbiol Resour Announc        ISSN: 2576-098X


  21 in total

1.  Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes.

Authors:  A Krogh; B Larsson; G von Heijne; E L Sonnhammer
Journal:  J Mol Biol       Date:  2001-01-19       Impact factor: 5.469

2.  ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences.

Authors:  Dean Laslett; Bjorn Canback
Journal:  Nucleic Acids Res       Date:  2004-01-02       Impact factor: 16.971

3.  Identifying bacterial genes and endosymbiont DNA with Glimmer.

Authors:  Arthur L Delcher; Kirsten A Bratke; Edwin C Powers; Steven L Salzberg
Journal:  Bioinformatics       Date:  2007-01-19       Impact factor: 6.937

4.  Phamerator: a bioinformatic tool for comparative bacteriophage genomics.

Authors:  Steven G Cresawn; Matt Bogel; Nathan Day; Deborah Jacobs-Sera; Roger W Hendrix; Graham F Hatfull
Journal:  BMC Bioinformatics       Date:  2011-10-12       Impact factor: 3.169

5.  Comparative genomic analysis of 60 Mycobacteriophage genomes: genome clustering, gene acquisition, and gene size.

Authors:  Graham F Hatfull; Deborah Jacobs-Sera; Jeffrey G Lawrence; Welkin H Pope; Daniel A Russell; Ching-Chung Ko; Rebecca J Weber; Manisha C Patel; Katherine L Germane; Robert H Edgar; Natasha N Hoyte; Charles A Bowman; Anthony T Tantoco; Elizabeth C Paladin; Marlana S Myers; Alexis L Smith; Molly S Grace; Thuy T Pham; Matthew B O'Brien; Amy M Vogelsberger; Andrew J Hryckowian; Jessica L Wynalek; Helen Donis-Keller; Matt W Bogel; Craig L Peebles; Steven G Cresawn; Roger W Hendrix
Journal:  J Mol Biol       Date:  2010-01-11       Impact factor: 5.469

6.  GeneMark: web software for gene finding in prokaryotes, eukaryotes and viruses.

Authors:  John Besemer; Mark Borodovsky
Journal:  Nucleic Acids Res       Date:  2005-07-01       Impact factor: 16.971

7.  The HHpred interactive server for protein homology detection and structure prediction.

Authors:  Johannes Söding; Andreas Biegert; Andrei N Lupas
Journal:  Nucleic Acids Res       Date:  2005-07-01       Impact factor: 16.971

8.  Bacteriophages of Gordonia spp. Display a Spectrum of Diversity and Genetic Relationships.

Authors:  Welkin H Pope; Travis N Mavrich; Rebecca A Garlena; Carlos A Guerrero-Bustamante; Deborah Jacobs-Sera; Matthew T Montgomery; Daniel A Russell; Marcie H Warner; Graham F Hatfull
Journal:  mBio       Date:  2017-08-15       Impact factor: 7.867

9.  Wildy Prize Lecture, 2020-2021: Who wouldn't want to discover a new virus?

Authors:  Graham F Hatfull
Journal:  Microbiology (Reading)       Date:  2021-09       Impact factor: 2.777

10.  Bacteriophage treatment of disseminated cutaneous Mycobacterium chelonae infection.

Authors:  Jessica S Little; Rebekah M Dedrick; Krista G Freeman; Madison Cristinziano; Bailey E Smith; Constance A Benson; Tulip A Jhaveri; Lindsey R Baden; Daniel A Solomon; Graham F Hatfull
Journal:  Nat Commun       Date:  2022-05-03       Impact factor: 14.919

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