Literature DB >> 36135363

Genome Sequences and Characteristics of Six Cluster B1 Mycobacteriophages Discovered at Saint Joseph's University.

Anne Winkler1, April Pivonka1, Aidan Conry-Murray1, Cecilia Petruconis1, Isabella Patterne1, Bernadette Bergman1, Elizabeth Binder1, Joshua Blackley1, Rachel Brown1, Katherine Commale1, Emily Costello1, Taylor Cromer1, Jasmine Davila1, Olivia DeSanto1, Mary Agnus Dunn1, Deborah Duong1, Sophia Feingold1, Kayla Flanders1, Mary Frattara1, Tate Fryczynski1, Leya Givvines1, Dana Glavin1, Reid Hartman1, Julia Iacovella1, Katherine Koestler1, Caroline Kominick1, Andy Lam1, Sharon Mashkovich1, Jordan McCarthy1, Corinne Merlino1, Alexa Mihaita1, Kara Moulton1, Thientrinh Nguyen1, Danielle Niblock1, Isabella Paoli1, Skye Rodriguez1, Isabella Stefanic1, Jenna Stoneroad1, Caren Teague1, Fabiana Tort-Umpierre1, Arianna Varano1, Alexandra Vlahovic1, John Braverman1, Christina King-Smith1, Julia Y Lee-Soety1.   

Abstract

We report on six new siphoviruses infecting Mycobacterium smegmatis that were isolated from soil samples collected on the campus of Saint Joseph's University, on the western edge of Philadelphia, Pennsylvania. All phages have circularly permuted genomes that are 68,721 to 68,929 bp long, with an average G+C content of 66.4%.

Entities:  

Year:  2022        PMID： 36135363      PMCID： PMC9584339          DOI： 10.1128/mra.00754-22

Source DB:  PubMed          Journal:  Microbiol Resour Announc        ISSN： 2576-098X


  13 in total

1.  Basic local alignment search tool.

Authors:  S F Altschul; W Gish; W Miller; E W Myers; D J Lipman
Journal:  J Mol Biol       Date:  1990-10-05       Impact factor: 5.469

2.  tRNAscan-SE: Searching for tRNA Genes in Genomic Sequences.

Authors:  Patricia P Chan; Todd M Lowe
Journal:  Methods Mol Biol       Date:  2019

3.  Sequencing, Assembling, and Finishing Complete Bacteriophage Genomes.

Authors:  Daniel A Russell
Journal:  Methods Mol Biol       Date:  2018

4.  Host and pathogen response to bacteriophage engineered against Mycobacterium abscessus lung infection.

Authors:  Jerry A Nick; Rebekah M Dedrick; Alice L Gray; Eszter K Vladar; Bailey E Smith; Krista G Freeman; Kenneth C Malcolm; L Elaine Epperson; Nabeeh A Hasan; Jo Hendrix; Kimberly Callahan; Kendra Walton; Brian Vestal; Emily Wheeler; Noel M Rysavy; Katie Poch; Silvia Caceres; Valerie K Lovell; Katherine B Hisert; Vinicius Calado de Moura; Delphi Chatterjee; Prithwiraj De; Natalia Weakly; Stacey L Martiniano; David A Lynch; Charles L Daley; Michael Strong; Fan Jia; Graham F Hatfull; Rebecca M Davidson
Journal:  Cell       Date:  2022-05-13       Impact factor: 66.850

5.  Functional domains of the HK97 capsid maturation protease and the mechanisms of protein encapsidation.

Authors:  Robert L Duda; Bonnie Oh; Roger W Hendrix
Journal:  J Mol Biol       Date:  2013-05-17       Impact factor: 5.469

6.  The HHpred interactive server for protein homology detection and structure prediction.

Authors:  Johannes Söding; Andreas Biegert; Andrei N Lupas
Journal:  Nucleic Acids Res       Date:  2005-07-01       Impact factor: 16.971

7.  The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs.

Authors:  Peter Schattner; Angela N Brooks; Todd M Lowe
Journal:  Nucleic Acids Res       Date:  2005-07-01       Impact factor: 16.971

8.  Bacteriophages of Gordonia spp. Display a Spectrum of Diversity and Genetic Relationships.

Authors:  Welkin H Pope; Travis N Mavrich; Rebecca A Garlena; Carlos A Guerrero-Bustamante; Deborah Jacobs-Sera; Matthew T Montgomery; Daniel A Russell; Marcie H Warner; Graham F Hatfull
Journal:  mBio       Date:  2017-08-15       Impact factor: 7.867

9.  Engineered bacteriophages for treatment of a patient with a disseminated drug-resistant Mycobacterium abscessus.

Authors:  Rebekah M Dedrick; Carlos A Guerrero-Bustamante; Rebecca A Garlena; Daniel A Russell; Katrina Ford; Kathryn Harris; Kimberly C Gilmour; James Soothill; Deborah Jacobs-Sera; Robert T Schooley; Graham F Hatfull; Helen Spencer
Journal:  Nat Med       Date:  2019-05-08       Impact factor: 53.440

10.  7-Deazaguanine modifications protect phage DNA from host restriction systems.

Authors:  Geoffrey Hutinet; Witold Kot; Liang Cui; Roman Hillebrand; Seetharamsingh Balamkundu; Shanmugavel Gnanakalai; Ramesh Neelakandan; Alexander B Carstens; Chuan Fa Lui; Denise Tremblay; Deborah Jacobs-Sera; Mandana Sassanfar; Yan-Jiun Lee; Peter Weigele; Sylvain Moineau; Graham F Hatfull; Peter C Dedon; Lars H Hansen; Valérie de Crécy-Lagard
Journal:  Nat Commun       Date:  2019-11-29       Impact factor: 14.919
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