Literature DB >> 28980880

Spurious transcription and its impact on cell function.

Joseph T Wade1,2, David C Grainger3.   

Abstract

Most RNA polymerases can initiate transcription from diverse DNA template sequences with relatively few outright sequence restraints. Recent reports have demonstrated that failure to subdue the promiscuity of RNA polymerase in vivo can severely impede cell function. This phenomenon appears common to all cell types with undesirable effects ranging from growth inhibition in prokaryotes to cancer in higher organisms. Here we discuss similarities and differences in strategies employed by cells to minimise spurious transcription across life's domains.

Entities:  

Keywords:  E. coli; H-NS; RNA polymerase; S. cerevisiae; S. pombe; cancer

Mesh:

Substances:

Year:  2017        PMID: 28980880      PMCID: PMC5927700          DOI: 10.1080/21541264.2017.1381794

Source DB:  PubMed          Journal:  Transcription        ISSN: 2154-1272


  85 in total

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Review 2.  Determinants of transcription initiation by archaeal RNA polymerase.

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Authors:  Amita A Joshi; Kevin Struhl
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4.  The complete genome sequence of Escherichia coli K-12.

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Journal:  Cell       Date:  2005-11-18       Impact factor: 41.582

6.  Cotranscriptional set2 methylation of histone H3 lysine 36 recruits a repressive Rpd3 complex.

Authors:  Michael-Christopher Keogh; Siavash K Kurdistani; Stephanie A Morris; Seong Hoon Ahn; Vladimir Podolny; Sean R Collins; Maya Schuldiner; Kayu Chin; Thanuja Punna; Natalie J Thompson; Charles Boone; Andrew Emili; Jonathan S Weissman; Timothy R Hughes; Brian D Strahl; Michael Grunstein; Jack F Greenblatt; Stephen Buratowski; Nevan J Krogan
Journal:  Cell       Date:  2005-11-18       Impact factor: 41.582

7.  Preferential accessibility of the yeast his3 promoter is determined by a general property of the DNA sequence, not by specific elements.

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Review 8.  Small silencing RNAs: an expanding universe.

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Journal:  Nat Rev Genet       Date:  2009-02       Impact factor: 53.242

9.  Promoter directionality is controlled by U1 snRNP and polyadenylation signals.

Authors:  Albert E Almada; Xuebing Wu; Andrea J Kriz; Christopher B Burge; Phillip A Sharp
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  11 in total

Review 1.  Diverse and dynamic DNA modifications in brain and diseases.

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Review 2.  Redefining fundamental concepts of transcription initiation in bacteria.

Authors:  Citlalli Mejía-Almonte; Stephen J W Busby; Joseph T Wade; Jacques van Helden; Adam P Arkin; Gary D Stormo; Karen Eilbeck; Bernhard O Palsson; James E Galagan; Julio Collado-Vides
Journal:  Nat Rev Genet       Date:  2020-07-14       Impact factor: 53.242

3.  Histone Chaperone FACT and Curaxins: Effects on Genome Structure and Function.

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4.  A novel bipartite antitermination system widespread in conjugative elements of Gram-positive bacteria.

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5.  Loosening chromatin and dysregulated transcription: a perspective on cryptic transcription during mammalian aging.

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Journal:  Brief Funct Genomics       Date:  2022-01-25       Impact factor: 4.840

6.  iRAPs curb antisense transcription in E. coli.

Authors:  Andrés Magán; Fabian Amman; Fatinah El-Isa; Natascha Hartl; Ilya Shamovsky; Evgeny Nudler; Renée Schroeder; Nadezda Sedlyarova
Journal:  Nucleic Acids Res       Date:  2019-11-18       Impact factor: 16.971

7.  The PWWP2A Histone Deacetylase Complex Represses Intragenic Spurious Transcription Initiation in mESCs.

Authors:  Guifeng Wei; Neil Brockdorff; Tianyi Zhang
Journal:  iScience       Date:  2020-10-29

8.  An Antisense RNA Fine-Tunes Gene Expression of the Type II MazEF Toxin-Antitoxin System.

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9.  Dissecting regulatory pathways for transcription recovery following DNA damage reveals a non-canonical function of the histone chaperone HIRA.

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Journal:  Nat Commun       Date:  2021-06-22       Impact factor: 14.919

10.  Genome-Wide Tiling Array Analysis of HPV-Induced Warts Reveals Aberrant Methylation of Protein-Coding and Non-Coding Regions.

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