Literature DB >> 19148191

Small silencing RNAs: an expanding universe.

Megha Ghildiyal1, Phillip D Zamore.   

Abstract

Since the discovery in 1993 of the first small silencing RNA, a dizzying number of small RNA classes have been identified, including microRNAs (miRNAs), small interfering RNAs (siRNAs) and Piwi-interacting RNAs (piRNAs). These classes differ in their biogenesis, their modes of target regulation and in the biological pathways they regulate. There is a growing realization that, despite their differences, these distinct small RNA pathways are interconnected, and that small RNA pathways compete and collaborate as they regulate genes and protect the genome from external and internal threats.

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Year:  2009        PMID: 19148191      PMCID: PMC2724769          DOI: 10.1038/nrg2504

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  227 in total

1.  RNA interference is mediated by 21- and 22-nucleotide RNAs.

Authors:  S M Elbashir; W Lendeckel; T Tuschl
Journal:  Genes Dev       Date:  2001-01-15       Impact factor: 11.361

2.  MicroRNA maturation: stepwise processing and subcellular localization.

Authors:  Yoontae Lee; Kipyoung Jeon; Jun-Tae Lee; Sunyoung Kim; V Narry Kim
Journal:  EMBO J       Date:  2002-09-02       Impact factor: 11.598

3.  A microRNA controlling left/right neuronal asymmetry in Caenorhabditis elegans.

Authors:  Robert J Johnston; Oliver Hobert
Journal:  Nature       Date:  2003-12-14       Impact factor: 49.962

4.  MicroRNA expression in zebrafish embryonic development.

Authors:  Erno Wienholds; Wigard P Kloosterman; Eric Miska; Ezequiel Alvarez-Saavedra; Eugene Berezikov; Ewart de Bruijn; H Robert Horvitz; Sakari Kauppinen; Ronald H A Plasterk
Journal:  Science       Date:  2005-05-26       Impact factor: 47.728

5.  Endogenous siRNAs derived from a pair of natural cis-antisense transcripts regulate salt tolerance in Arabidopsis.

Authors:  Omar Borsani; Jianhua Zhu; Paul E Verslues; Ramanjulu Sunkar; Jian-Kang Zhu
Journal:  Cell       Date:  2005-12-29       Impact factor: 41.582

6.  Role for a bidentate ribonuclease in the initiation step of RNA interference.

Authors:  E Bernstein; A A Caudy; S M Hammond; G J Hannon
Journal:  Nature       Date:  2001-01-18       Impact factor: 49.962

7.  R2D2, a bridge between the initiation and effector steps of the Drosophila RNAi pathway.

Authors:  Qinghua Liu; Tim A Rand; Savitha Kalidas; Fenghe Du; Hyun-Eui Kim; Dean P Smith; Xiaodong Wang
Journal:  Science       Date:  2003-09-26       Impact factor: 47.728

8.  Human Argonaute2 mediates RNA cleavage targeted by miRNAs and siRNAs.

Authors:  Gunter Meister; Markus Landthaler; Agnieszka Patkaniowska; Yair Dorsett; Grace Teng; Thomas Tuschl
Journal:  Mol Cell       Date:  2004-07-23       Impact factor: 17.970

9.  Developmentally regulated piRNA clusters implicate MILI in transposon control.

Authors:  Alexei A Aravin; Ravi Sachidanandam; Angelique Girard; Katalin Fejes-Toth; Gregory J Hannon
Journal:  Science       Date:  2007-04-19       Impact factor: 47.728

10.  Drosophila microRNAs are sorted into functionally distinct argonaute complexes after production by dicer-1.

Authors:  Klaus Förstemann; Michael D Horwich; Liangmeng Wee; Yukihide Tomari; Phillip D Zamore
Journal:  Cell       Date:  2007-07-27       Impact factor: 41.582

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  1031 in total

Review 1.  MicroRNAs, wild-type and mutant p53: more questions than answers.

Authors:  Matthew Jones; Ashish Lal
Journal:  RNA Biol       Date:  2012-06-01       Impact factor: 4.652

2.  Drosophila Piwi functions downstream of piRNA production mediating a chromatin-based transposon silencing mechanism in female germ line.

Authors:  Sidney H Wang; Sarah C R Elgin
Journal:  Proc Natl Acad Sci U S A       Date:  2011-12-12       Impact factor: 11.205

3.  Profiling of short RNAs using Helicos single-molecule sequencing.

Authors:  Philipp Kapranov; Fatih Ozsolak; Patrice M Milos
Journal:  Methods Mol Biol       Date:  2012

4.  Mouse MOV10L1 associates with Piwi proteins and is an essential component of the Piwi-interacting RNA (piRNA) pathway.

Authors:  Ke Zheng; Jordi Xiol; Michael Reuter; Sigrid Eckardt; N Adrian Leu; K John McLaughlin; Alexander Stark; Ravi Sachidanandam; Ramesh S Pillai; Peijing Jeremy Wang
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-01       Impact factor: 11.205

Review 5.  Charity begins at home: non-coding RNA functions in DNA repair.

Authors:  Dipanjan Chowdhury; Young Eun Choi; Marie Eve Brault
Journal:  Nat Rev Mol Cell Biol       Date:  2013-02-06       Impact factor: 94.444

Review 6.  Recognizing the enemy within: licensing RNA-guided genome defense.

Authors:  Phillip A Dumesic; Hiten D Madhani
Journal:  Trends Biochem Sci       Date:  2013-11-23       Impact factor: 13.807

7.  Endogenous post-transcriptional gene silencing of flavone synthase resulting in high accumulation of anthocyanins in black dahlia cultivars.

Authors:  Ayumi Deguchi; Sho Ohno; Munetaka Hosokawa; Fumi Tatsuzawa; Motoaki Doi
Journal:  Planta       Date:  2013-02-07       Impact factor: 4.116

8.  Transfer RNA as a source of small functional RNA.

Authors:  Megumi Shigematsu; Shozo Honda; Yohei Kirino
Journal:  J Mol Biol Mol Imaging       Date:  2014

Review 9.  Antiviral Immunity and Virus-Mediated Antagonism in Disease Vector Mosquitoes.

Authors:  Glady Hazitha Samuel; Zach N Adelman; Kevin M Myles
Journal:  Trends Microbiol       Date:  2018-01-31       Impact factor: 17.079

10.  TRIM65 regulates microRNA activity by ubiquitination of TNRC6.

Authors:  Shitao Li; Lingyan Wang; Bishi Fu; Michael A Berman; Alos Diallo; Martin E Dorf
Journal:  Proc Natl Acad Sci U S A       Date:  2014-04-28       Impact factor: 11.205

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