Literature DB >> 28965759

Temporal Control of Mammalian Cortical Neurogenesis by m6A Methylation.

Ki-Jun Yoon1, Francisca Rojas Ringeling2, Caroline Vissers3, Fadi Jacob4, Michael Pokrass3, Dennisse Jimenez-Cyrus5, Yijing Su6, Nam-Shik Kim7, Yunhua Zhu8, Lily Zheng2, Sunghan Kim8, Xinyuan Wang6, Louis C Doré9, Peng Jin10, Sergi Regot11, Xiaoxi Zhuang12, Stefan Canzar13, Chuan He9, Guo-Li Ming14, Hongjun Song15.   

Abstract

N6-methyladenosine (m6A), installed by the Mettl3/Mettl14 methyltransferase complex, is the most prevalent internal mRNA modification. Whether m6A regulates mammalian brain development is unknown. Here, we show that m6A depletion by Mettl14 knockout in embryonic mouse brains prolongs the cell cycle of radial glia cells and extends cortical neurogenesis into postnatal stages. m6A depletion by Mettl3 knockdown also leads to a prolonged cell cycle and maintenance of radial glia cells. m6A sequencing of embryonic mouse cortex reveals enrichment of mRNAs related to transcription factors, neurogenesis, the cell cycle, and neuronal differentiation, and m6A tagging promotes their decay. Further analysis uncovers previously unappreciated transcriptional prepatterning in cortical neural stem cells. m6A signaling also regulates human cortical neurogenesis in forebrain organoids. Comparison of m6A-mRNA landscapes between mouse and human cortical neurogenesis reveals enrichment of human-specific m6A tagging of transcripts related to brain-disorder risk genes. Our study identifies an epitranscriptomic mechanism in heightened transcriptional coordination during mammalian cortical neurogenesis.
Copyright © 2017 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Mettl14; RNA methylation; autism; epitranscriptomics; human organoid; m(6)A; neurogenesis; radial glia cell; schizophrenia; transcriptional prepatterning

Mesh:

Substances:

Year:  2017        PMID: 28965759      PMCID: PMC5679435          DOI: 10.1016/j.cell.2017.09.003

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  58 in total

1.  Pax6, Tbr2, and Tbr1 are expressed sequentially by radial glia, intermediate progenitor cells, and postmitotic neurons in developing neocortex.

Authors:  Chris Englund; Andy Fink; Charmaine Lau; Diane Pham; Ray A M Daza; Alessandro Bulfone; Tom Kowalczyk; Robert F Hevner
Journal:  J Neurosci       Date:  2005-01-05       Impact factor: 6.167

Review 2.  Cell types to order: temporal specification of CNS stem cells.

Authors:  Hideyuki Okano; Sally Temple
Journal:  Curr Opin Neurobiol       Date:  2009-05-06       Impact factor: 6.627

3.  GABA regulates synaptic integration of newly generated neurons in the adult brain.

Authors:  Shaoyu Ge; Eyleen L K Goh; Kurt A Sailor; Yasuji Kitabatake; Guo-li Ming; Hongjun Song
Journal:  Nature       Date:  2005-12-11       Impact factor: 49.962

4.  m(6)A RNA modification controls cell fate transition in mammalian embryonic stem cells.

Authors:  Pedro J Batista; Benoit Molinie; Jinkai Wang; Kun Qu; Jiajing Zhang; Lingjie Li; Donna M Bouley; Ernesto Lujan; Bahareh Haddad; Kaveh Daneshvar; Ava C Carter; Ryan A Flynn; Chan Zhou; Kok-Seong Lim; Peter Dedon; Marius Wernig; Alan C Mullen; Yi Xing; Cosmas C Giallourakis; Howard Y Chang
Journal:  Cell Stem Cell       Date:  2014-10-16       Impact factor: 24.633

5.  Fast gapped-read alignment with Bowtie 2.

Authors:  Ben Langmead; Steven L Salzberg
Journal:  Nat Methods       Date:  2012-03-04       Impact factor: 28.547

Review 6.  Regulation of cytoplasmic mRNA decay.

Authors:  Daniel R Schoenberg; Lynne E Maquat
Journal:  Nat Rev Genet       Date:  2012-03-06       Impact factor: 53.242

Review 7.  Epitranscriptome sequencing technologies: decoding RNA modifications.

Authors:  Xiaoyu Li; Xushen Xiong; Chengqi Yi
Journal:  Nat Methods       Date:  2016-12-29       Impact factor: 28.547

Review 8.  Chromatin modifiers and remodellers: regulators of cellular differentiation.

Authors:  Taiping Chen; Sharon Y R Dent
Journal:  Nat Rev Genet       Date:  2013-12-24       Impact factor: 53.242

Review 9.  Epigenetic mechanisms in neurogenesis.

Authors:  Bing Yao; Kimberly M Christian; Chuan He; Peng Jin; Guo-Li Ming; Hongjun Song
Journal:  Nat Rev Neurosci       Date:  2016-06-23       Impact factor: 34.870

10.  HTSeq--a Python framework to work with high-throughput sequencing data.

Authors:  Simon Anders; Paul Theodor Pyl; Wolfgang Huber
Journal:  Bioinformatics       Date:  2014-09-25       Impact factor: 6.937

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  234 in total

Review 1.  The epitranscriptome and synaptic plasticity.

Authors:  Mathieu N Flamand; Kate D Meyer
Journal:  Curr Opin Neurobiol       Date:  2019-05-17       Impact factor: 6.627

Review 2.  Small changes, big implications: The impact of m6A RNA methylation on gene expression in pluripotency and development.

Authors:  Adam M Heck; Carol J Wilusz
Journal:  Biochim Biophys Acta Gene Regul Mech       Date:  2019-07-17       Impact factor: 4.490

3.  RBM15 Modulates the Function of Chromatin Remodeling Factor BAF155 Through RNA Methylation in Developing Cortex.

Authors:  Yuanbin Xie; Ricardo Castro-Hernández; Godwin Sokpor; Linh Pham; Ramanathan Narayanan; Joachim Rosenbusch; Jochen F Staiger; Tran Tuoc
Journal:  Mol Neurobiol       Date:  2019-04-24       Impact factor: 5.590

Review 4.  Chemical Modifications in the Life of an mRNA Transcript.

Authors:  Sigrid Nachtergaele; Chuan He
Journal:  Annu Rev Genet       Date:  2018-09-19       Impact factor: 16.830

5.  Suppression of m6A reader Ythdf2 promotes hematopoietic stem cell expansion.

Authors:  Zhenrui Li; Pengxu Qian; Wanqing Shao; Hailing Shi; Xi C He; Madelaine Gogol; Zulin Yu; Yongfu Wang; Meijie Qi; Yunfei Zhu; John M Perry; Kai Zhang; Fang Tao; Kun Zhou; Deqing Hu; Yingli Han; Chongbei Zhao; Richard Alexander; Hanzhang Xu; Shiyuan Chen; Allison Peak; Kathyrn Hall; Michael Peterson; Anoja Perera; Jeffrey S Haug; Tari Parmely; Hua Li; Bin Shen; Julia Zeitlinger; Chuan He; Linheng Li
Journal:  Cell Res       Date:  2018-07-31       Impact factor: 25.617

Review 6.  Applications of Human Brain Organoids to Clinical Problems.

Authors:  H Isaac Chen; Hongjun Song; Guo-Li Ming
Journal:  Dev Dyn       Date:  2018-10-02       Impact factor: 3.780

7.  Regulation of Co-transcriptional Pre-mRNA Splicing by m6A through the Low-Complexity Protein hnRNPG.

Authors:  Katherine I Zhou; Hailing Shi; Ruitu Lyu; Adam C Wylder; Żaneta Matuszek; Jessica N Pan; Chuan He; Marc Parisien; Tao Pan
Journal:  Mol Cell       Date:  2019-08-21       Impact factor: 17.970

Review 8.  Epigenetic regulation of cortical neurogenesis; orchestrating fate switches at the right time and place.

Authors:  Manal A Adam; Corey C Harwell
Journal:  Curr Opin Neurobiol       Date:  2020-05-16       Impact factor: 6.627

Review 9.  Deciphering the Epitranscriptomic Signatures in Cell Fate Determination and Development.

Authors:  Varun Haran; Nibedita Lenka
Journal:  Stem Cell Rev Rep       Date:  2019-08       Impact factor: 5.739

Review 10.  m6A RNA Methylation Controls Neural Development and Is Involved in Human Diseases.

Authors:  Kunzhao Du; Longbin Zhang; Trevor Lee; Tao Sun
Journal:  Mol Neurobiol       Date:  2018-06-16       Impact factor: 5.590

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