Literature DB >> 22392217

Regulation of cytoplasmic mRNA decay.

Daniel R Schoenberg1, Lynne E Maquat.   

Abstract

Discoveries made over the past 20 years highlight the importance of mRNA decay as a means of modulating gene expression and thereby protein production. Up until recently, studies largely focused on identifying cis-acting sequences that serve as mRNA stability or instability elements, the proteins that bind these elements, how the process of translation influences mRNA decay and the ribonucleases that catalyse decay. Now, current studies have begun to elucidate how the decay process is regulated. This Review examines our current understanding of how mammalian cell mRNA decay is controlled by different signalling pathways and lays out a framework for future research.

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Year:  2012        PMID: 22392217      PMCID: PMC3351101          DOI: 10.1038/nrg3160

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  119 in total

1.  Nuclear HuR accumulation through phosphorylation by Cdk1.

Authors:  Hyeon Ho Kim; Kotb Abdelmohsen; Ashish Lal; Rudolf Pullmann; Xiaoling Yang; Stefanie Galban; Subramanya Srikantan; Jennifer L Martindale; Justin Blethrow; Kevan M Shokat; Myriam Gorospe
Journal:  Genes Dev       Date:  2008-07-01       Impact factor: 11.361

2.  Upf1 phosphorylation triggers translational repression during nonsense-mediated mRNA decay.

Authors:  Olaf Isken; Yoon Ki Kim; Nao Hosoda; Greg L Mayeur; John W B Hershey; Lynne E Maquat
Journal:  Cell       Date:  2008-04-18       Impact factor: 41.582

3.  SKAR links pre-mRNA splicing to mTOR/S6K1-mediated enhanced translation efficiency of spliced mRNAs.

Authors:  Xiaoju Max Ma; Sang-Oh Yoon; Celeste J Richardson; Kristina Jülich; John Blenis
Journal:  Cell       Date:  2008-04-18       Impact factor: 41.582

4.  Hypoxic inhibition of nonsense-mediated RNA decay regulates gene expression and the integrated stress response.

Authors:  Lawrence B Gardner
Journal:  Mol Cell Biol       Date:  2008-03-24       Impact factor: 4.272

5.  Role of the RNA-binding protein tristetraprolin in glucocorticoid-mediated gene regulation.

Authors:  Faoud T Ishmael; Xi Fang; Maria Rosaria Galdiero; Ulus Atasoy; William F C Rigby; Myriam Gorospe; Chris Cheadle; Cristiana Stellato
Journal:  J Immunol       Date:  2008-06-15       Impact factor: 5.422

Review 6.  Control of mRNA decay by phosphorylation of tristetraprolin.

Authors:  Heike Sandler; Georg Stoecklin
Journal:  Biochem Soc Trans       Date:  2008-06       Impact factor: 5.407

7.  The splicing factor SF2/ASF regulates translation initiation by enhancing phosphorylation of 4E-BP1.

Authors:  Gracjan Michlewski; Jeremy R Sanford; Javier F Cáceres
Journal:  Mol Cell       Date:  2008-04-25       Impact factor: 17.970

8.  The RNA-binding protein CUGBP1 regulates stability of tumor necrosis factor mRNA in muscle cells: implications for myotonic dystrophy.

Authors:  Libin Zhang; Jerome E Lee; Jeffrey Wilusz; Carol J Wilusz
Journal:  J Biol Chem       Date:  2008-06-16       Impact factor: 5.157

9.  The AU-rich element mRNA decay-promoting activity of BRF1 is regulated by mitogen-activated protein kinase-activated protein kinase 2.

Authors:  Sushmit Maitra; Chu-Fang Chou; Christian A Luber; Kyung-Yeol Lee; Matthias Mann; Ching-Yi Chen
Journal:  RNA       Date:  2008-03-06       Impact factor: 4.942

10.  Posttranscriptional gene regulation by spatial rearrangement of the 3' untranslated region.

Authors:  Andrea B Eberle; Lukas Stalder; Hansruedi Mathys; Rodolfo Zamudio Orozco; Oliver Mühlemann
Journal:  PLoS Biol       Date:  2008-04-29       Impact factor: 8.029

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  318 in total

1.  Mechanistic Multi-Tissue Modeling of Glucocorticoid-Induced Leucine Zipper Regulation: Integrating Circadian Gene Expression with Receptor-Mediated Corticosteroid Pharmacodynamics.

Authors:  Vivaswath S Ayyar; Debra C DuBois; Richard R Almon; William J Jusko
Journal:  J Pharmacol Exp Ther       Date:  2017-07-20       Impact factor: 4.030

Review 2.  Genome-wide technology for determining RNA stability in mammalian cells: historical perspective and recent advantages based on modified nucleotide labeling.

Authors:  Hidenori Tani; Nobuyoshi Akimitsu
Journal:  RNA Biol       Date:  2012-10-01       Impact factor: 4.652

3.  FUS regulates genes coding for RNA-binding proteins in neurons by binding to their highly conserved introns.

Authors:  Tadashi Nakaya; Panagiotis Alexiou; Manolis Maragkakis; Alexandra Chang; Zissimos Mourelatos
Journal:  RNA       Date:  2013-02-06       Impact factor: 4.942

Review 4.  Nanoscale platforms for messenger RNA delivery.

Authors:  Bin Li; Xinfu Zhang; Yizhou Dong
Journal:  Wiley Interdiscip Rev Nanomed Nanobiotechnol       Date:  2018-05-04

5.  Viral manipulation of host mRNA decay.

Authors:  Liang Guo; Irina Vlasova-St Louis; Paul R Bohjanen
Journal:  Future Virol       Date:  2018-02-23       Impact factor: 1.831

6.  Changes in cellular mRNA stability, splicing, and polyadenylation through HuR protein sequestration by a cytoplasmic RNA virus.

Authors:  Michael D Barnhart; Stephanie L Moon; Alexander W Emch; Carol J Wilusz; Jeffrey Wilusz
Journal:  Cell Rep       Date:  2013-11-07       Impact factor: 9.423

Review 7.  Long noncoding RNA turnover.

Authors:  Je-Hyun Yoon; Jiyoung Kim; Myriam Gorospe
Journal:  Biochimie       Date:  2015-03-10       Impact factor: 4.079

Review 8.  The intimate relationships of mRNA decay and translation.

Authors:  Bijoyita Roy; Allan Jacobson
Journal:  Trends Genet       Date:  2013-09-30       Impact factor: 11.639

Review 9.  Nonsense-mediated decay in genetic disease: friend or foe?

Authors:  Jake N Miller; David A Pearce
Journal:  Mutat Res Rev Mutat Res       Date:  2014-05-28       Impact factor: 5.657

10.  Pumilio response and AU-rich elements drive rapid decay of Pnrc2-regulated cyclic gene transcripts.

Authors:  Kiel T Tietz; Thomas L Gallagher; Monica C Mannings; Zachary T Morrow; Nicolas L Derr; Sharon L Amacher
Journal:  Dev Biol       Date:  2020-04-01       Impact factor: 3.582

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