Literature DB >> 24366184

Chromatin modifiers and remodellers: regulators of cellular differentiation.

Taiping Chen1, Sharon Y R Dent1.   

Abstract

Cellular differentiation is, by definition, epigenetic. Genome-wide profiling of pluripotent cells and differentiated cells suggests global chromatin remodelling during differentiation, which results in a progressive transition from a fairly open chromatin configuration to a more compact state. Genetic studies in mouse models show major roles for a variety of histone modifiers and chromatin remodellers in key developmental transitions, such as the segregation of embryonic and extra-embryonic lineages in blastocyst stage embryos, the formation of the three germ layers during gastrulation and the differentiation of adult stem cells. Furthermore, rather than merely stabilizing the gene expression changes that are driven by developmental transcription factors, there is emerging evidence that chromatin regulators have multifaceted roles in cell fate decisions.

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Year:  2013        PMID: 24366184      PMCID: PMC3999985          DOI: 10.1038/nrg3607

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  140 in total

1.  The polycomb group protein L3mbtl2 assembles an atypical PRC1-family complex that is essential in pluripotent stem cells and early development.

Authors:  Jinzhong Qin; Warren A Whyte; Endre Anderssen; Effie Apostolou; Hsu-Hsin Chen; Schahram Akbarian; Roderick T Bronson; Konrad Hochedlinger; Sridhar Ramaswamy; Richard A Young; Hanno Hock
Journal:  Cell Stem Cell       Date:  2012-07-05       Impact factor: 24.633

Review 2.  Histone variants in pluripotency and disease.

Authors:  Peter J Skene; Steven Henikoff
Journal:  Development       Date:  2013-06       Impact factor: 6.868

3.  SetDB1 contributes to repression of genes encoding developmental regulators and maintenance of ES cell state.

Authors:  Steve Bilodeau; Michael H Kagey; Garrett M Frampton; Peter B Rahl; Richard A Young
Journal:  Genes Dev       Date:  2009-11-01       Impact factor: 11.361

4.  Genome-wide maps of histone modifications unwind in vivo chromatin states of the hair follicle lineage.

Authors:  Wen-Hui Lien; Xingyi Guo; Lisa Polak; Lee N Lawton; Richard A Young; Deyou Zheng; Elaine Fuchs
Journal:  Cell Stem Cell       Date:  2011-09-02       Impact factor: 24.633

5.  H3K9 methylation is a barrier during somatic cell reprogramming into iPSCs.

Authors:  Jiekai Chen; He Liu; Jing Liu; Jing Qi; Bei Wei; Jiaqi Yang; Hanquan Liang; You Chen; Jing Chen; Yaran Wu; Lin Guo; Jieying Zhu; Xiangjie Zhao; Tianran Peng; Yixin Zhang; Shen Chen; Xuejia Li; Dongwei Li; Tao Wang; Duanqing Pei
Journal:  Nat Genet       Date:  2012-12-02       Impact factor: 38.330

6.  Identification of 67 histone marks and histone lysine crotonylation as a new type of histone modification.

Authors:  Minjia Tan; Hao Luo; Sangkyu Lee; Fulai Jin; Jeong Soo Yang; Emilie Montellier; Thierry Buchou; Zhongyi Cheng; Sophie Rousseaux; Nisha Rajagopal; Zhike Lu; Zhen Ye; Qin Zhu; Joanna Wysocka; Yang Ye; Saadi Khochbin; Bing Ren; Yingming Zhao
Journal:  Cell       Date:  2011-09-16       Impact factor: 41.582

7.  Rnf2 (Ring1b) deficiency causes gastrulation arrest and cell cycle inhibition.

Authors:  Jan Willem Voncken; Bernard A J Roelen; Mieke Roefs; Stijn de Vries; Els Verhoeven; Silvia Marino; Jacqueline Deschamps; Maarten van Lohuizen
Journal:  Proc Natl Acad Sci U S A       Date:  2003-02-14       Impact factor: 11.205

8.  Polycomb complexes act redundantly to repress genomic repeats and genes.

Authors:  Martin Leeb; Diego Pasini; Maria Novatchkova; Markus Jaritz; Kristian Helin; Anton Wutz
Journal:  Genes Dev       Date:  2010-02-01       Impact factor: 11.361

9.  Chromatin signatures in multipotent human hematopoietic stem cells indicate the fate of bivalent genes during differentiation.

Authors:  Kairong Cui; Chongzhi Zang; Tae-Young Roh; Dustin E Schones; Richard W Childs; Weiqun Peng; Keji Zhao
Journal:  Cell Stem Cell       Date:  2009-01-09       Impact factor: 24.633

10.  RYBP-PRC1 complexes mediate H2A ubiquitylation at polycomb target sites independently of PRC2 and H3K27me3.

Authors:  Lígia Tavares; Emilia Dimitrova; David Oxley; Judith Webster; Raymond Poot; Jeroen Demmers; Karel Bezstarosti; Stephen Taylor; Hiroki Ura; Hiroshi Koide; Anton Wutz; Miguel Vidal; Sarah Elderkin; Neil Brockdorff
Journal:  Cell       Date:  2012-02-09       Impact factor: 41.582

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  242 in total

Review 1.  Transcriptional and Epigenomic Regulation of Adipogenesis.

Authors:  Ji-Eun Lee; Hannah Schmidt; Binbin Lai; Kai Ge
Journal:  Mol Cell Biol       Date:  2019-05-14       Impact factor: 4.272

Review 2.  Prostate Cancer Epigenetics: From Basic Mechanisms to Clinical Implications.

Authors:  Srinivasan Yegnasubramanian; Angelo M De Marzo; William G Nelson
Journal:  Cold Spring Harb Perspect Med       Date:  2019-04-01       Impact factor: 6.915

3.  Transcriptional Regulation of the First Cell Fate Decision.

Authors:  Catherine Rhee; Jonghwan Kim; Haley O Tucker
Journal:  J Dev Biol Regen Med       Date:  2017-10-26

4.  Cell Fate by SIRT6 and TETs.

Authors:  Jean-Pierre Etchegaray; Raul Mostoslavsky
Journal:  Cell Cycle       Date:  2015-06-11       Impact factor: 4.534

5.  Telomere dysfunction cooperates with epigenetic alterations to impair murine embryonic stem cell fate commitment.

Authors:  Aditi Qamra; Tsz Wai Chu; Mélanie Criqui; Monika Sharma; Julissa Tsao; Danielle A Henry; Dalia Barsyte-Lovejoy; Cheryl H Arrowsmith; Neil Winegarden; Mathieu Lupien; Lea Harrington
Journal:  Elife       Date:  2020-04-16       Impact factor: 8.140

Review 6.  Cancer stem cells: Regulation programs, immunological properties and immunotherapy.

Authors:  Dingxiao Zhang; Dean G Tang; Kiera Rycaj
Journal:  Semin Cancer Biol       Date:  2018-05-09       Impact factor: 15.707

7.  The histone deacetylase SIRT6 controls embryonic stem cell fate via TET-mediated production of 5-hydroxymethylcytosine.

Authors:  Jean-Pierre Etchegaray; Lukas Chavez; Yun Huang; Kenneth N Ross; Jiho Choi; Barbara Martinez-Pastor; Ryan M Walsh; Cesar A Sommer; Matthias Lienhard; Adrianne Gladden; Sita Kugel; Dafne M Silberman; Sridhar Ramaswamy; Gustavo Mostoslavsky; Konrad Hochedlinger; Alon Goren; Anjana Rao; Raul Mostoslavsky
Journal:  Nat Cell Biol       Date:  2015-04-27       Impact factor: 28.824

8.  Activin/Smad2-induced Histone H3 Lys-27 Trimethylation (H3K27me3) Reduction Is Crucial to Initiate Mesendoderm Differentiation of Human Embryonic Stem Cells.

Authors:  Lu Wang; Xuanhao Xu; Yaqiang Cao; Zhongwei Li; Hao Cheng; Gaoyang Zhu; Fuyu Duan; Jie Na; Jing-Dong J Han; Ye-Guang Chen
Journal:  J Biol Chem       Date:  2016-12-13       Impact factor: 5.157

9.  Transdifferentiation Requires iNOS Activation: Role of RING1A S-Nitrosylation.

Authors:  Shu Meng; Gang Zhou; Qilin Gu; Palas K Chanda; Frank Ospino; John P Cooke
Journal:  Circ Res       Date:  2016-09-13       Impact factor: 17.367

10.  Tet2 is required to resolve inflammation by recruiting Hdac2 to specifically repress IL-6.

Authors:  Qian Zhang; Kai Zhao; Qicong Shen; Yanmei Han; Yan Gu; Xia Li; Dezhi Zhao; Yiqi Liu; Chunmei Wang; Xiang Zhang; Xiaoping Su; Juan Liu; Wei Ge; Ross L Levine; Nan Li; Xuetao Cao
Journal:  Nature       Date:  2015-08-19       Impact factor: 49.962

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