Literature DB >> 28749735

The Discovery, Mechanisms, and Evolutionary Impact of Anti-CRISPRs.

Adair L Borges1, Alan R Davidson2, Joseph Bondy-Denomy1.   

Abstract

Bacteria and archaea use CRISPR-Cas adaptive immune systems to defend themselves from infection by bacteriophages (phages). These RNA-guided nucleases are powerful weapons in the fight against foreign DNA, such as phages and plasmids, as well as a revolutionary gene editing tool. Phages are not passive bystanders in their interactions with CRISPR-Cas systems, however; recent discoveries have described phage genes that inhibit CRISPR-Cas function. More than 20 protein families, previously of unknown function, have been ascribed anti-CRISPR function. Here, we discuss how these CRISPR-Cas inhibitors were discovered and their modes of action were elucidated. We also consider the potential impact of anti-CRISPRs on bacterial and phage evolution. Finally, we speculate about the future of this field.

Entities:  

Keywords:  CRISPR-Cas; Cas9; anti-CRISPR; bacteriophage

Mesh:

Substances:

Year:  2017        PMID: 28749735      PMCID: PMC6039114          DOI: 10.1146/annurev-virology-101416-041616

Source DB:  PubMed          Journal:  Annu Rev Virol        ISSN: 2327-056X            Impact factor:   10.431


  110 in total

Review 1.  Bacteriophage resistance mechanisms.

Authors:  Simon J Labrie; Julie E Samson; Sylvain Moineau
Journal:  Nat Rev Microbiol       Date:  2010-03-29       Impact factor: 60.633

2.  Parasite Exposure Drives Selective Evolution of Constitutive versus Inducible Defense.

Authors:  Edze R Westra; Stineke van Houte; Sam Oyesiku-Blakemore; Ben Makin; Jenny M Broniewski; Alex Best; Joseph Bondy-Denomy; Alan Davidson; Mike Boots; Angus Buckling
Journal:  Curr Biol       Date:  2015-03-12       Impact factor: 10.834

3.  Structural basis of Cas3 inhibition by the bacteriophage protein AcrF3.

Authors:  Xiaofei Wang; Deqiang Yao; Jin-Gen Xu; A-Rong Li; Jianpo Xu; Panhan Fu; Yan Zhou; Yongqun Zhu
Journal:  Nat Struct Mol Biol       Date:  2016-07-25       Impact factor: 15.369

4.  Arms races between and within species.

Authors:  R Dawkins; J R Krebs
Journal:  Proc R Soc Lond B Biol Sci       Date:  1979-09-21

5.  Degradation of Phage Transcripts by CRISPR-Associated RNases Enables Type III CRISPR-Cas Immunity.

Authors:  Wenyan Jiang; Poulami Samai; Luciano A Marraffini
Journal:  Cell       Date:  2016-02-04       Impact factor: 41.582

6.  Diversity and evolution of class 2 CRISPR-Cas systems.

Authors:  Sergey Shmakov; Aaron Smargon; David Scott; David Cox; Neena Pyzocha; Winston Yan; Omar O Abudayyeh; Jonathan S Gootenberg; Kira S Makarova; Yuri I Wolf; Konstantin Severinov; Feng Zhang; Eugene V Koonin
Journal:  Nat Rev Microbiol       Date:  2017-01-23       Impact factor: 60.633

7.  Phage response to CRISPR-encoded resistance in Streptococcus thermophilus.

Authors:  Hélène Deveau; Rodolphe Barrangou; Josiane E Garneau; Jessica Labonté; Christophe Fremaux; Patrick Boyaval; Dennis A Romero; Philippe Horvath; Sylvain Moineau
Journal:  J Bacteriol       Date:  2007-12-07       Impact factor: 3.490

8.  In vitro reconstitution of an Escherichia coli RNA-guided immune system reveals unidirectional, ATP-dependent degradation of DNA target.

Authors:  Sabin Mulepati; Scott Bailey
Journal:  J Biol Chem       Date:  2013-06-11       Impact factor: 5.157

9.  Prophages mediate defense against phage infection through diverse mechanisms.

Authors:  Joseph Bondy-Denomy; Jason Qian; Edze R Westra; Angus Buckling; David S Guttman; Alan R Davidson; Karen L Maxwell
Journal:  ISME J       Date:  2016-06-03       Impact factor: 10.302

10.  Sequence- and structure-specific RNA processing by a CRISPR endonuclease.

Authors:  Rachel E Haurwitz; Martin Jinek; Blake Wiedenheft; Kaihong Zhou; Jennifer A Doudna
Journal:  Science       Date:  2010-09-10       Impact factor: 47.728

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  68 in total

1.  Listeria Phages Induce Cas9 Degradation to Protect Lysogenic Genomes.

Authors:  Beatriz A Osuna; Shweta Karambelkar; Caroline Mahendra; Kathleen A Christie; Bianca Garcia; Alan R Davidson; Benjamin P Kleinstiver; Samuel Kilcher; Joseph Bondy-Denomy
Journal:  Cell Host Microbe       Date:  2020-04-22       Impact factor: 21.023

2.  Critical Anti-CRISPR Locus Repression by a Bi-functional Cas9 Inhibitor.

Authors:  Beatriz A Osuna; Shweta Karambelkar; Caroline Mahendra; Anne Sarbach; Matthew C Johnson; Samuel Kilcher; Joseph Bondy-Denomy
Journal:  Cell Host Microbe       Date:  2020-04-22       Impact factor: 21.023

3.  Structural insight into multistage inhibition of CRISPR-Cas12a by AcrVA4.

Authors:  Ruchao Peng; Zhiteng Li; Ying Xu; Shaoshuai He; Qi Peng; Lian-Ao Wu; Ying Wu; Jianxun Qi; Peiyi Wang; Yi Shi; George F Gao
Journal:  Proc Natl Acad Sci U S A       Date:  2019-08-29       Impact factor: 11.205

Review 4.  Structure-based functional mechanisms and biotechnology applications of anti-CRISPR proteins.

Authors:  Ning Jia; Dinshaw J Patel
Journal:  Nat Rev Mol Cell Biol       Date:  2021-06-04       Impact factor: 94.444

5.  CRISPR still needs microbiologists.

Authors: 
Journal:  Nat Microbiol       Date:  2018-06       Impact factor: 17.745

Review 6.  In vivo locus-specific editing of the neuroepigenome.

Authors:  Yun Young Yim; Collin D Teague; Eric J Nestler
Journal:  Nat Rev Neurosci       Date:  2020-07-23       Impact factor: 34.870

Review 7.  How bacteria control the CRISPR-Cas arsenal.

Authors:  Lina M Leon; Senén D Mendoza; Joseph Bondy-Denomy
Journal:  Curr Opin Microbiol       Date:  2017-11-21       Impact factor: 7.934

Review 8.  Structures and Strategies of Anti-CRISPR-Mediated Immune Suppression.

Authors:  Tanner Wiegand; Shweta Karambelkar; Joseph Bondy-Denomy; Blake Wiedenheft
Journal:  Annu Rev Microbiol       Date:  2020-06-05       Impact factor: 15.500

9.  Bacteriophage Cooperation Suppresses CRISPR-Cas3 and Cas9 Immunity.

Authors:  Adair L Borges; Jenny Y Zhang; MaryClare F Rollins; Beatriz A Osuna; Blake Wiedenheft; Joseph Bondy-Denomy
Journal:  Cell       Date:  2018-07-19       Impact factor: 41.582

10.  Machine learning predicts new anti-CRISPR proteins.

Authors:  Simon Eitzinger; Amina Asif; Kyle E Watters; Anthony T Iavarone; Gavin J Knott; Jennifer A Doudna; Fayyaz Ul Amir Afsar Minhas
Journal:  Nucleic Acids Res       Date:  2020-05-21       Impact factor: 16.971

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