Literature DB >> 32503371

Structures and Strategies of Anti-CRISPR-Mediated Immune Suppression.

Tanner Wiegand1, Shweta Karambelkar2, Joseph Bondy-Denomy2,3, Blake Wiedenheft1.   

Abstract

More than 50 protein families have been identified that inhibit CRISPR (clustered regularly interspaced short palindromic repeats)-Cas-mediated adaptive immune systems. Here, we analyze the available anti-CRISPR (Acr) structures and describe common themes and unique mechanisms of stoichiometric and enzymatic suppressors of CRISPR-Cas. Stoichiometric inhibitors often function as molecular decoys of protein-binding partners or nucleic acid targets, while enzymatic suppressors covalently modify Cas ribonucleoprotein complexes or degrade immune signaling molecules. We review mechanistic insights that have been revealed by structures of Acrs, discuss some of the trade-offs associated with each of these strategies, and highlight how Acrs are regulated and deployed in the race to overcome adaptive immunity.

Entities:  

Keywords:  CRISPR-Cas; Cas9; anti-CRISPR; bacteriophage; immunity

Mesh:

Substances:

Year:  2020        PMID: 32503371      PMCID: PMC7712631          DOI: 10.1146/annurev-micro-020518-120107

Source DB:  PubMed          Journal:  Annu Rev Microbiol        ISSN: 0066-4227            Impact factor:   15.500


  85 in total

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Authors:  Gil Amitai; Rotem Sorek
Journal:  Nat Rev Microbiol       Date:  2016-01-11       Impact factor: 60.633

2.  Mechanism of foreign DNA recognition by a CRISPR RNA-guided surveillance complex from Pseudomonas aeruginosa.

Authors:  MaryClare F Rollins; Jason T Schuman; Kirra Paulus; Habib S T Bukhari; Blake Wiedenheft
Journal:  Nucleic Acids Res       Date:  2015-02-27       Impact factor: 16.971

3.  Structure basis for RNA-guided DNA degradation by Cascade and Cas3.

Authors:  Yibei Xiao; Min Luo; Adam E Dolan; Maofu Liao; Ailong Ke
Journal:  Science       Date:  2018-06-07       Impact factor: 47.728

4.  The Conformational Dynamics of Cas9 Governing DNA Cleavage Are Revealed by Single-Molecule FRET.

Authors:  Mengyi Yang; Sijia Peng; Ruirui Sun; Jingdi Lin; Nan Wang; Chunlai Chen
Journal:  Cell Rep       Date:  2018-01-09       Impact factor: 9.423

5.  Diverse Mechanisms of CRISPR-Cas9 Inhibition by Type IIC Anti-CRISPR Proteins.

Authors:  Yalan Zhu; Ang Gao; Qi Zhan; Yong Wang; Han Feng; Songqing Liu; Guangxia Gao; Alexander Serganov; Pu Gao
Journal:  Mol Cell       Date:  2019-03-05       Impact factor: 17.970

Review 6.  Conformational regulation of CRISPR-associated nucleases.

Authors:  Ryan N Jackson; Paul Bg van Erp; Samuel H Sternberg; Blake Wiedenheft
Journal:  Curr Opin Microbiol       Date:  2017-06-21       Impact factor: 7.934

7.  The CRISPR/Cas adaptive immune system of Pseudomonas aeruginosa mediates resistance to naturally occurring and engineered phages.

Authors:  Kyle C Cady; Joe Bondy-Denomy; Gary E Heussler; Alan R Davidson; George A O'Toole
Journal:  J Bacteriol       Date:  2012-08-10       Impact factor: 3.490

8.  Phage response to CRISPR-encoded resistance in Streptococcus thermophilus.

Authors:  Hélène Deveau; Rodolphe Barrangou; Josiane E Garneau; Jessica Labonté; Christophe Fremaux; Patrick Boyaval; Dennis A Romero; Philippe Horvath; Sylvain Moineau
Journal:  J Bacteriol       Date:  2007-12-07       Impact factor: 3.490

9.  A CRISPR evolutionary arms race: structural insights into viral anti-CRISPR/Cas responses.

Authors:  Jiuyu Wang; Jun Ma; Zhi Cheng; Xu Meng; Lilan You; Min Wang; Xinzheng Zhang; Yanli Wang
Journal:  Cell Res       Date:  2016-09-02       Impact factor: 25.617

10.  Disabling Cas9 by an anti-CRISPR DNA mimic.

Authors:  Jiyung Shin; Fuguo Jiang; Jun-Jie Liu; Nicolas L Bray; Benjamin J Rauch; Seung Hyun Baik; Eva Nogales; Joseph Bondy-Denomy; Jacob E Corn; Jennifer A Doudna
Journal:  Sci Adv       Date:  2017-07-12       Impact factor: 14.136

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  22 in total

Review 1.  Structure-based functional mechanisms and biotechnology applications of anti-CRISPR proteins.

Authors:  Ning Jia; Dinshaw J Patel
Journal:  Nat Rev Mol Cell Biol       Date:  2021-06-04       Impact factor: 94.444

Review 2.  Chemistry of Class 1 CRISPR-Cas effectors: Binding, editing, and regulation.

Authors:  Tina Y Liu; Jennifer A Doudna
Journal:  J Biol Chem       Date:  2020-08-14       Impact factor: 5.157

Review 3.  Alternative functions of CRISPR-Cas systems in the evolutionary arms race.

Authors:  Prarthana Mohanraju; Chinmoy Saha; Peter van Baarlen; Rogier Louwen; Raymond H J Staals; John van der Oost
Journal:  Nat Rev Microbiol       Date:  2022-01-06       Impact factor: 60.633

4.  CRISPR inactivation by integration.

Authors:  Joseph Bondy-Denomy
Journal:  Nat Microbiol       Date:  2021-12       Impact factor: 17.745

5.  Crystal structure of the anti-CRISPR, AcrIIC4.

Authors:  Gi Eob Kim; So Yeon Lee; Hyun Ho Park
Journal:  Protein Sci       Date:  2021-10-29       Impact factor: 6.725

6.  The novel anti-CRISPR AcrIIA22 relieves DNA torsion in target plasmids and impairs SpyCas9 activity.

Authors:  Kevin J Forsberg; Danica T Schmidtke; Rachel Werther; Ruben V Uribe; Deanna Hausman; Morten O A Sommer; Barry L Stoddard; Brett K Kaiser; Harmit S Malik
Journal:  PLoS Biol       Date:  2021-10-13       Impact factor: 8.029

7.  Anti-CRISPRdb v2.2: an online repository of anti-CRISPR proteins including information on inhibitory mechanisms, activities and neighbors of curated anti-CRISPR proteins.

Authors:  Chuan Dong; Xin Wang; Cong Ma; Zhi Zeng; Dong-Kai Pu; Shuo Liu; Candy-S Wu; Shixin Chen; Zixin Deng; Feng-Biao Guo
Journal:  Database (Oxford)       Date:  2022-03-28       Impact factor: 4.462

Review 8.  Anti-CRISPRs go viral: The infection biology of CRISPR-Cas inhibitors.

Authors:  Yuping Li; Joseph Bondy-Denomy
Journal:  Cell Host Microbe       Date:  2021-01-13       Impact factor: 21.023

9.  Phage anti-CBASS and anti-Pycsar nucleases subvert bacterial immunity.

Authors:  Samuel J Hobbs; Tanita Wein; Allen Lu; Benjamin R Morehouse; Julia Schnabel; Azita Leavitt; Erez Yirmiya; Rotem Sorek; Philip J Kranzusch
Journal:  Nature       Date:  2022-04-08       Impact factor: 69.504

10.  Crystal structure of the anti-CRISPR repressor Aca2.

Authors:  Ben Usher; Nils Birkholz; Izaak N Beck; Robert D Fagerlund; Simon A Jackson; Peter C Fineran; Tim R Blower
Journal:  J Struct Biol       Date:  2021-06-08       Impact factor: 2.867

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