Literature DB >> 32704051

In vivo locus-specific editing of the neuroepigenome.

Yun Young Yim1,2, Collin D Teague1,2, Eric J Nestler3,4.   

Abstract

Studies over the past several decades have identified numerous epigenetic mechanisms associated with pathological states in psychiatric and neurological disease. Until recently, studies investigating chromatin-regulatory proteins, using overexpression or knockdown approaches, did not establish causal roles for epigenetic modifications at specific genes because these techniques typically affect hundreds or thousands of genomic loci. In this Review, we describe recent efforts in using locus-specific neuroepigenome editing in vivo to, for the first time, define causal relationships between a single chromatin modification at a specific gene in a defined cell population and downstream measures at the molecular, cellular, circuit and behavioural levels. We briefly introduce three epigenome-editing platforms: zinc-finger proteins, transcriptional activator-like effectors and clustered regularly interspaced short palindromic repeats (CRISPR). We then explore the development of in vivo neuroepigenome-editing tools and their applications to resolve epigenetic contributions to the pathophysiology of brain diseases. We also discuss technical considerations for in vivo neuroepigenome-editing experiments and ongoing innovations in the field, including new tools to investigate chromatin marks, manipulate chromatin topology and induce epigenetic modifications at multiple genes in the same cell. Lastly, we explore the potential clinical applications of in vivo neuroepigenome editing for treating brain pathology.

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Year:  2020        PMID: 32704051      PMCID: PMC7439525          DOI: 10.1038/s41583-020-0334-y

Source DB:  PubMed          Journal:  Nat Rev Neurosci        ISSN: 1471-003X            Impact factor:   34.870


  104 in total

Review 1.  Translating the histone code.

Authors:  T Jenuwein; C D Allis
Journal:  Science       Date:  2001-08-10       Impact factor: 47.728

2.  Development of zinc finger domains for recognition of the 5'-ANN-3' family of DNA sequences and their use in the construction of artificial transcription factors.

Authors:  B Dreier; R R Beerli; D J Segal; J D Flippin; C F Barbas
Journal:  J Biol Chem       Date:  2001-05-04       Impact factor: 5.157

Review 3.  DNA methylation landscapes: provocative insights from epigenomics.

Authors:  Miho M Suzuki; Adrian Bird
Journal:  Nat Rev Genet       Date:  2008-06       Impact factor: 53.242

Review 4.  Structure and function of long noncoding RNAs in epigenetic regulation.

Authors:  Tim R Mercer; John S Mattick
Journal:  Nat Struct Mol Biol       Date:  2013-03       Impact factor: 15.369

Review 5.  Cornerstones of CRISPR-Cas in drug discovery and therapy.

Authors:  Christof Fellmann; Benjamin G Gowen; Pei-Chun Lin; Jennifer A Doudna; Jacob E Corn
Journal:  Nat Rev Drug Discov       Date:  2016-12-23       Impact factor: 84.694

6.  CRISPR-mediated modular RNA-guided regulation of transcription in eukaryotes.

Authors:  Luke A Gilbert; Matthew H Larson; Leonardo Morsut; Zairan Liu; Gloria A Brar; Sandra E Torres; Noam Stern-Ginossar; Onn Brandman; Evan H Whitehead; Jennifer A Doudna; Wendell A Lim; Jonathan S Weissman; Lei S Qi
Journal:  Cell       Date:  2013-07-11       Impact factor: 41.582

Review 7.  Editing the Epigenome to Tackle Brain Disorders.

Authors:  X Shawn Liu; Rudolf Jaenisch
Journal:  Trends Neurosci       Date:  2019-11-07       Impact factor: 16.978

8.  Stress resilience is promoted by a Zfp189-driven transcriptional network in prefrontal cortex.

Authors:  Zachary S Lorsch; Peter J Hamilton; Aarthi Ramakrishnan; Eric M Parise; Marine Salery; William J Wright; Ashley E Lepack; Philipp Mews; Orna Issler; Andrew McKenzie; Xianxiao Zhou; Lyonna F Parise; Stephen T Pirpinias; Idelisse Ortiz Torres; Hope G Kronman; Sarah E Montgomery; Yong-Hwee Eddie Loh; Benoit Labonté; Andrew Conkey; Ann E Symonds; Rachael L Neve; Gustavo Turecki; Ian Maze; Yan Dong; Bin Zhang; Li Shen; Rosemary C Bagot; Eric J Nestler
Journal:  Nat Neurosci       Date:  2019-08-19       Impact factor: 24.884

9.  CRISPR RNA-guided activation of endogenous human genes.

Authors:  Morgan L Maeder; Samantha J Linder; Vincent M Cascio; Yanfang Fu; Quan H Ho; J Keith Joung
Journal:  Nat Methods       Date:  2013-07-25       Impact factor: 28.547

10.  Optical control of mammalian endogenous transcription and epigenetic states.

Authors:  Silvana Konermann; Mark D Brigham; Alexandro Trevino; Patrick D Hsu; Matthias Heidenreich; Le Cong; Randall J Platt; David A Scott; George M Church; Feng Zhang
Journal:  Nature       Date:  2013-08-23       Impact factor: 49.962

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  18 in total

1.  From Circuits to Chromatin: The Emerging Role of Epigenetics in Mental Health.

Authors:  Philipp Mews; Erin S Calipari; Jeremy Day; Mary Kay Lobo; Timothy Bredy; Ted Abel
Journal:  J Neurosci       Date:  2021-01-14       Impact factor: 6.167

2.  ΔFOSB: A Potentially Druggable Master Orchestrator of Activity-Dependent Gene Expression.

Authors:  Alfred J Robison; Eric J Nestler
Journal:  ACS Chem Neurosci       Date:  2022-01-12       Impact factor: 4.418

Review 3.  PIWI-Interacting RNA (piRNA) and Epigenetic Editing in Environmental Health Sciences.

Authors:  Bambarendage P U Perera; Rachel K Morgan; Katelyn M Polemi; Kimmie E Sala-Hamrick; Laurie K Svoboda; Dana C Dolinoy
Journal:  Curr Environ Health Rep       Date:  2022-08-02

4.  Gene-Targeted, CREB-Mediated Induction of ΔFosB Controls Distinct Downstream Transcriptional Patterns Within D1 and D2 Medium Spiny Neurons.

Authors:  Casey K Lardner; Yentl van der Zee; Molly S Estill; Hope G Kronman; Marine Salery; Ashley M Cunningham; Arthur Godino; Eric M Parise; Jee Hyun Kim; Rachael L Neve; Li Shen; Peter J Hamilton; Eric J Nestler
Journal:  Biol Psychiatry       Date:  2021-07-01       Impact factor: 12.810

Review 5.  Viral tools for neuroscience.

Authors:  Alexander R Nectow; Eric J Nestler
Journal:  Nat Rev Neurosci       Date:  2020-10-27       Impact factor: 34.870

Review 6.  Emerging strategies for the genetic dissection of gene functions, cell types, and neural circuits in the mammalian brain.

Authors:  Ling Gong; Xue Liu; Jinyun Wu; Miao He
Journal:  Mol Psychiatry       Date:  2021-09-24       Impact factor: 15.992

Review 7.  Key transcription factors mediating cocaine-induced plasticity in the nucleus accumbens.

Authors:  Collin D Teague; Eric J Nestler
Journal:  Mol Psychiatry       Date:  2021-06-02       Impact factor: 13.437

8.  Altered hypothalamic DNA methylation and stress-induced hyperactivity following early life stress.

Authors:  Eamon Fitzgerald; Matthew C Sinton; Sara Wernig-Zorc; Nicholas M Morton; Megan C Holmes; James P Boardman; Amanda J Drake
Journal:  Epigenetics Chromatin       Date:  2021-06-30       Impact factor: 4.954

9.  The Molecular Basis of Depression: Implications of Sex-Related Differences in Epigenetic Regulation.

Authors:  Ayako Kawatake-Kuno; Toshiya Murai; Shusaku Uchida
Journal:  Front Mol Neurosci       Date:  2021-07-01       Impact factor: 5.639

Review 10.  Postzygotic Somatic Mutations in the Human Brain Expand the Threshold-Liability Model of Schizophrenia.

Authors:  Shiva M Singh; Christina A Castellani; Kathleen A Hill
Journal:  Front Psychiatry       Date:  2020-10-22       Impact factor: 4.157

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