Literature DB >> 29169146

How bacteria control the CRISPR-Cas arsenal.

Lina M Leon1, Senén D Mendoza1, Joseph Bondy-Denomy2.   

Abstract

CRISPR-Cas systems are adaptive immune systems that protect their hosts from predation by bacteriophages (phages) and parasitism by other mobile genetic elements (MGEs). Given the potent nuclease activity of CRISPR effectors, these enzymes must be carefully regulated to minimize toxicity and maximize anti-phage immunity. While attention has been given to the transcriptional regulation of these systems (reviewed in [1]), less consideration has been given to the crucial post-translational processes that govern enzyme activation and inactivation. Here, we review recent findings that describe how Cas nucleases are controlled in diverse systems to provide a robust anti-viral response while limiting auto-immunity. We also draw comparisons to a distinct bacterial immune system, restriction-modification.
Copyright © 2017 Elsevier Ltd. All rights reserved.

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Year:  2017        PMID: 29169146      PMCID: PMC5899631          DOI: 10.1016/j.mib.2017.11.005

Source DB:  PubMed          Journal:  Curr Opin Microbiol        ISSN: 1369-5274            Impact factor:   7.934


  94 in total

1.  Structure and activity of the Cas3 HD nuclease MJ0384, an effector enzyme of the CRISPR interference.

Authors:  Natalia Beloglazova; Pierre Petit; Robert Flick; Greg Brown; Alexei Savchenko; Alexander F Yakunin
Journal:  EMBO J       Date:  2011-10-18       Impact factor: 11.598

2.  The Interfaces of Genetic Conflict Are Hot Spots for Innovation.

Authors:  Joshua Carter; Connor Hoffman; Blake Wiedenheft
Journal:  Cell       Date:  2017-01-12       Impact factor: 41.582

3.  Inhibition of CRISPR-Cas9 with Bacteriophage Proteins.

Authors:  Benjamin J Rauch; Melanie R Silvis; Judd F Hultquist; Christopher S Waters; Michael J McGregor; Nevan J Krogan; Joseph Bondy-Denomy
Journal:  Cell       Date:  2016-12-29       Impact factor: 41.582

4.  Cas5d processes pre-crRNA and is a member of a larger family of CRISPR RNA endonucleases.

Authors:  Erin L Garside; Matthew J Schellenberg; Emily M Gesner; Jeffrey B Bonanno; J Michael Sauder; Stephen K Burley; Steven C Almo; Garima Mehta; Andrew M MacMillan
Journal:  RNA       Date:  2012-09-24       Impact factor: 4.942

5.  Type III CRISPR-Cas systems produce cyclic oligoadenylate second messengers.

Authors:  Ole Niewoehner; Carmela Garcia-Doval; Jakob T Rostøl; Christian Berk; Frank Schwede; Laurent Bigler; Jonathan Hall; Luciano A Marraffini; Martin Jinek
Journal:  Nature       Date:  2017-07-19       Impact factor: 49.962

6.  Programmable RNA shredding by the type III-A CRISPR-Cas system of Streptococcus thermophilus.

Authors:  Gintautas Tamulaitis; Migle Kazlauskiene; Elena Manakova; Česlovas Venclovas; Alison O Nwokeoji; Mark J Dickman; Philippe Horvath; Virginijus Siksnys
Journal:  Mol Cell       Date:  2014-11-06       Impact factor: 17.970

Review 7.  Diversity, classification and evolution of CRISPR-Cas systems.

Authors:  Eugene V Koonin; Kira S Makarova; Feng Zhang
Journal:  Curr Opin Microbiol       Date:  2017-06-09       Impact factor: 7.934

8.  A novel family of sequence-specific endoribonucleases associated with the clustered regularly interspaced short palindromic repeats.

Authors:  Natalia Beloglazova; Greg Brown; Matthew D Zimmerman; Michael Proudfoot; Kira S Makarova; Marina Kudritska; Samvel Kochinyan; Shuren Wang; Maksymilian Chruszcz; Wladek Minor; Eugene V Koonin; Aled M Edwards; Alexei Savchenko; Alexander F Yakunin
Journal:  J Biol Chem       Date:  2008-05-15       Impact factor: 5.157

9.  Structural basis for DNase activity of a conserved protein implicated in CRISPR-mediated genome defense.

Authors:  Blake Wiedenheft; Kaihong Zhou; Martin Jinek; Scott M Coyle; Wendy Ma; Jennifer A Doudna
Journal:  Structure       Date:  2009-06-10       Impact factor: 5.006

10.  CRISPR-Cas systems exploit viral DNA injection to establish and maintain adaptive immunity.

Authors:  Joshua W Modell; Wenyan Jiang; Luciano A Marraffini
Journal:  Nature       Date:  2017-03-29       Impact factor: 49.962

View more
  9 in total

Review 1.  The CRISPR conundrum: evolve and maybe die, or survive and risk stagnation.

Authors:  Jesús García-Martínez; Rafael D Maldonado; Noemí M Guzmán; Francisco J M Mojica
Journal:  Microb Cell       Date:  2018-05-16

Review 2.  Delivering on the promise of gene editing for cystic fibrosis.

Authors:  Craig A Hodges; Ronald A Conlon
Journal:  Genes Dis       Date:  2018-11-25

3.  Natural tuning of restriction endonuclease synthesis by cluster of rare arginine codons.

Authors:  Iwona Mruk; Tadeusz Kaczorowski; Agata Witczak
Journal:  Sci Rep       Date:  2019-04-09       Impact factor: 4.379

Review 4.  Advances in biosensing: The CRISPR/Cas system as a new powerful tool for the detection of nucleic acids.

Authors:  Andrea Bonini; Noemi Poma; Federico Vivaldi; Arno Kirchhain; Pietro Salvo; Daria Bottai; Arianna Tavanti; Fabio Di Francesco
Journal:  J Pharm Biomed Anal       Date:  2020-09-24       Impact factor: 3.935

Review 5.  Digging into the lesser-known aspects of CRISPR biology.

Authors:  Noemí M Guzmán; Belén Esquerra-Ruvira; Francisco J M Mojica
Journal:  Int Microbiol       Date:  2021-09-06       Impact factor: 2.479

6.  Double nicking by RNA-directed Cascade-nCas3 for high-efficiency large-scale genome engineering.

Authors:  Yile Hao; Qinhua Wang; Jie Li; Shihui Yang; Yanli Zheng; Wenfang Peng
Journal:  Open Biol       Date:  2022-01-12       Impact factor: 6.411

Review 7.  CRISPR-Cas Systems-Based Bacterial Detection: A Scoping Review.

Authors:  Kasturi Selvam; Mohamad Ahmad Najib; Muhammad Fazli Khalid; Mehmet Ozsoz; Ismail Aziah
Journal:  Diagnostics (Basel)       Date:  2022-05-27

Review 8.  Evolutionary Dynamics between Phages and Bacteria as a Possible Approach for Designing Effective Phage Therapies against Antibiotic-Resistant Bacteria.

Authors:  Mahadi Hasan; Juhee Ahn
Journal:  Antibiotics (Basel)       Date:  2022-07-07

9.  Characterization of CRISPR-Cas systems in Bifidobacterium breve.

Authors:  Xiao Han; Xingya Zhou; Zhangming Pei; Catherine Stanton; R Paul Ross; Jianxin Zhao; Hao Zhang; Bo Yang; Wei Chen
Journal:  Microb Genom       Date:  2022-04
  9 in total

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