Literature DB >> 28671683

A molecular rheostat maintains ATP levels to drive a synthetic biochemistry system.

Paul H Opgenorth1, Tyler P Korman1, Liviu Iancu1, James U Bowie1.   

Abstract

Synthetic biochemistry seeks to engineer complex metabolic pathways for chemical conversions outside the constraints of the cell. Establishment of effective and flexible cell-free systems requires the development of simple systems to replace the intricate regulatory mechanisms that exist in cells for maintaining high-energy cofactor balance. Here we describe a simple rheostat that regulates ATP levels by controlling the flow down either an ATP-generating or non-ATP-generating pathway according to the free-phosphate concentration. We implemented this concept for the production of isobutanol from glucose. The rheostat maintains adequate ATP concentrations even in the presence of ATPase contamination. The final system including the rheostat produced 24.1 ± 1.8 g/L of isobutanol from glucose in 91% theoretical yield with an initial productivity of 1.3 g/L/h. The molecular rheostat concept can be used in the design of continuously operating, self-sustaining synthetic biochemistry systems.

Entities:  

Mesh:

Substances:

Year:  2017        PMID: 28671683     DOI: 10.1038/nchembio.2418

Source DB:  PubMed          Journal:  Nat Chem Biol        ISSN: 1552-4450            Impact factor:   15.040


  21 in total

1.  Spontaneous high-yield production of hydrogen from cellulosic materials and water catalyzed by enzyme cocktails.

Authors:  Xinhao Ye; Yiran Wang; Robert C Hopkins; Michael W W Adams; Barbara R Evans; Jonathan R Mielenz; Y-H Percival Zhang
Journal:  ChemSusChem       Date:  2009       Impact factor: 8.928

2.  In vitro production of n-butanol from glucose.

Authors:  Borimas Krutsakorn; Kohsuke Honda; Xiaoting Ye; Takashi Imagawa; Xiaoyu Bei; Kenji Okano; Hisao Ohtake
Journal:  Metab Eng       Date:  2013-09-19       Impact factor: 9.783

3.  Five hard truths for synthetic biology.

Authors:  Roberta Kwok
Journal:  Nature       Date:  2010-01-21       Impact factor: 49.962

Review 4.  Cell-free synthetic biology: thinking outside the cell.

Authors:  C Eric Hodgman; Michael C Jewett
Journal:  Metab Eng       Date:  2011-09-18       Impact factor: 9.783

5.  A synthetic biochemistry system for the in vitro production of isoprene from glycolysis intermediates.

Authors:  Tyler P Korman; Bobby Sahachartsiri; Dan Li; Jeffrey M Vinokur; David Eisenberg; James U Bowie
Journal:  Protein Sci       Date:  2014-03-12       Impact factor: 6.725

6.  A synthetic biochemistry module for production of bio-based chemicals from glucose.

Authors:  Paul H Opgenorth; Tyler P Korman; James U Bowie
Journal:  Nat Chem Biol       Date:  2016-04-11       Impact factor: 15.040

7.  A synthetic biochemistry molecular purge valve module that maintains redox balance.

Authors:  Paul H Opgenorth; Tyler P Korman; James U Bowie
Journal:  Nat Commun       Date:  2014-06-17       Impact factor: 14.919

8.  Isobutanol production as an alternative metabolic sink to rescue the growth deficiency of the glycogen mutant of Synechococcus elongatus PCC 7942.

Authors:  Xiaoqian Li; Claire R Shen; James C Liao
Journal:  Photosynth Res       Date:  2014-03-04       Impact factor: 3.573

9.  Crystal structure of two ternary complexes of phosphorylating glyceraldehyde-3-phosphate dehydrogenase from Bacillus stearothermophilus with NAD and D-glyceraldehyde 3-phosphate.

Authors:  Claude Didierjean; Catherine Corbier; Mustapha Fatih; Frédérique Favier; Sandrine Boschi-Muller; Guy Branlant; André Aubry
Journal:  J Biol Chem       Date:  2003-02-04       Impact factor: 5.157

10.  High-yield hydrogen production from starch and water by a synthetic enzymatic pathway.

Authors:  Y-H Percival Zhang; Barbara R Evans; Jonathan R Mielenz; Robert C Hopkins; Michael W W Adams
Journal:  PLoS One       Date:  2007-05-23       Impact factor: 3.240

View more
  7 in total

Review 1.  A critical comparison of cellular and cell-free bioproduction systems.

Authors:  Nico J Claassens; Simon Burgener; Bastian Vögeli; Tobias J Erb; Arren Bar-Even
Journal:  Curr Opin Biotechnol       Date:  2019-06-14       Impact factor: 9.740

2.  Cell-Free Total Biosynthesis of Plant Terpene Natural Products using an Orthogonal Cofactor Regeneration System.

Authors:  Undramaa Bat-Erdene; John M Billingsley; William C Turner; Benjamin R Lichman; Francesca M Ippoliti; Neil K Garg; Sarah E O'Connor; Yi Tang
Journal:  ACS Catal       Date:  2021-07-23       Impact factor: 13.084

3.  A cell-free platform for the prenylation of natural products and application to cannabinoid production.

Authors:  Meaghan A Valliere; Tyler P Korman; Nicholas B Woodall; Gregory A Khitrov; Robert E Taylor; David Baker; James U Bowie
Journal:  Nat Commun       Date:  2019-02-04       Impact factor: 14.919

4.  A synthetic metabolic network for physicochemical homeostasis.

Authors:  Tjeerd Pols; Hendrik R Sikkema; Bauke F Gaastra; Jacopo Frallicciardi; Wojciech M Śmigiel; Shubham Singh; Bert Poolman
Journal:  Nat Commun       Date:  2019-09-18       Impact factor: 14.919

Review 5.  Toward bioproduction of oxo chemicals from C1 feedstocks using isobutyraldehyde as an example.

Authors:  Liwei Guo; Lichao Sun; Yi-Xin Huo
Journal:  Biotechnol Biofuels Bioprod       Date:  2022-08-09

Review 6.  An in vitro synthetic biology platform for emerging industrial biomanufacturing: Bottom-up pathway design.

Authors:  Ting Shi; Pingping Han; Chun You; Yi-Heng P Job Zhang
Journal:  Synth Syst Biotechnol       Date:  2018-05-30

7.  MEMO: A Method for Computing Metabolic Modules for Cell-Free Production Systems.

Authors:  Axel von Kamp; Steffen Klamt
Journal:  ACS Synth Biol       Date:  2020-03-02       Impact factor: 5.110

  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.