Literature DB >> 24623472

A synthetic biochemistry system for the in vitro production of isoprene from glycolysis intermediates.

Tyler P Korman1, Bobby Sahachartsiri, Dan Li, Jeffrey M Vinokur, David Eisenberg, James U Bowie.   

Abstract

The high yields required for the economical production of chemicals and fuels using microbes can be difficult to achieve due to the complexities of cellular metabolism. An alternative to performing biochemical transformations in microbes is to build biochemical pathways in vitro, an approach we call synthetic biochemistry. Here we test whether the full mevalonate pathway can be reconstituted in vitro and used to produce the commodity chemical isoprene. We construct an in vitro synthetic biochemical pathway that uses the carbon and ATP produced from the glycolysis intermediate phosphoenolpyruvate to run the mevalonate pathway. The system involves 12 enzymes to perform the complex transformation, while providing and balancing the ATP, NADPH, and acetyl-CoA cofactors. The optimized system produces isoprene from phosphoenolpyruvate in ∼100% molar yield. Thus, by inserting the isoprene pathway into previously developed glycolysis modules it may be possible to produce isoprene and other acetyl-CoA derived isoprenoids from glucose in vitro.
© 2014 The Protein Society.

Entities:  

Keywords:  biofuel; commodity chemicals; green chemistry; in vitro synthesis; isoprenoids; metabolic engineering

Mesh:

Substances:

Year:  2014        PMID: 24623472      PMCID: PMC4005709          DOI: 10.1002/pro.2436

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  41 in total

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Authors:  I F DURR; H RUDNEY
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2.  In vitro production of n-butanol from glucose.

Authors:  Borimas Krutsakorn; Kohsuke Honda; Xiaoting Ye; Takashi Imagawa; Xiaoyu Bei; Kenji Okano; Hisao Ohtake
Journal:  Metab Eng       Date:  2013-09-19       Impact factor: 9.783

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Review 4.  Cell-free synthetic biology: thinking outside the cell.

Authors:  C Eric Hodgman; Michael C Jewett
Journal:  Metab Eng       Date:  2011-09-18       Impact factor: 9.783

5.  Overexpression of a cytosolic hydroxymethylglutaryl-CoA reductase leads to squalene accumulation in yeast.

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Journal:  Appl Microbiol Biotechnol       Date:  1998-01       Impact factor: 4.813

6.  Enterococcus faecalis acetoacetyl-coenzyme A thiolase/3-hydroxy-3-methylglutaryl-coenzyme A reductase, a dual-function protein of isopentenyl diphosphate biosynthesis.

Authors:  Matija Hedl; Autumn Sutherlin; E Imogen Wilding; Marie Mazzulla; Damien McDevitt; Pamela Lane; John W Burgner; Kevin R Lehnbeuter; Cynthia V Stauffacher; Michael N Gwynn; Victor W Rodwell
Journal:  J Bacteriol       Date:  2002-04       Impact factor: 3.490

7.  Origins and early evolution of the mevalonate pathway of isoprenoid biosynthesis in the three domains of life.

Authors:  Jonathan Lombard; David Moreira
Journal:  Mol Biol Evol       Date:  2010-07-22       Impact factor: 16.240

8.  Identification of the gene encoding lipoate-protein ligase A of Escherichia coli. Molecular cloning and characterization of the lplA gene and gene product.

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Journal:  J Biol Chem       Date:  1994-06-10       Impact factor: 5.157

9.  Metabolic engineering of Escherichia coli for limonene and perillyl alcohol production.

Authors:  Jorge Alonso-Gutierrez; Rossana Chan; Tanveer S Batth; Paul D Adams; Jay D Keasling; Christopher J Petzold; Taek Soon Lee
Journal:  Metab Eng       Date:  2013-05-29       Impact factor: 9.783

10.  Genetic selection system for improving recombinant membrane protein expression in E. coli.

Authors:  Elizabeth Massey-Gendel; Anni Zhao; Gabriella Boulting; Hye-Yeon Kim; Michael A Balamotis; Len M Seligman; Robert K Nakamoto; James U Bowie
Journal:  Protein Sci       Date:  2009-02       Impact factor: 6.725

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  15 in total

Review 1.  Biomanufacturing: history and perspective.

Authors:  Yi-Heng Percival Zhang; Jibin Sun; Yanhe Ma
Journal:  J Ind Microbiol Biotechnol       Date:  2016-11-11       Impact factor: 3.346

Review 2.  Cell-free metabolic engineering: biomanufacturing beyond the cell.

Authors:  Quentin M Dudley; Ashty S Karim; Michael C Jewett
Journal:  Biotechnol J       Date:  2014-10-15       Impact factor: 4.677

3.  A molecular rheostat maintains ATP levels to drive a synthetic biochemistry system.

Authors:  Paul H Opgenorth; Tyler P Korman; Liviu Iancu; James U Bowie
Journal:  Nat Chem Biol       Date:  2017-07-03       Impact factor: 15.040

4.  Enzyme alchemy: cell-free synthetic biochemistry for natural products.

Authors:  Simon J Moore
Journal:  Emerg Top Life Sci       Date:  2019-11-11

5.  Enzymatic process optimization for the in vitro production of isoprene from mevalonate.

Authors:  Tao Cheng; Hui Liu; Huibin Zou; Ningning Chen; Mengxun Shi; Congxia Xie; Guang Zhao; Mo Xian
Journal:  Microb Cell Fact       Date:  2017-01-09       Impact factor: 5.328

Review 6.  Modules for in vitro metabolic engineering: Pathway assembly for bio-based production of value-added chemicals.

Authors:  Hironori Taniguchi; Kenji Okano; Kohsuke Honda
Journal:  Synth Syst Biotechnol       Date:  2017-06-07

7.  A synthetic biochemistry platform for cell free production of monoterpenes from glucose.

Authors:  Tyler P Korman; Paul H Opgenorth; James U Bowie
Journal:  Nat Commun       Date:  2017-05-24       Impact factor: 14.919

8.  Evidence of a novel mevalonate pathway in archaea.

Authors:  Jeffrey M Vinokur; Tyler P Korman; Zheng Cao; James U Bowie
Journal:  Biochemistry       Date:  2014-06-18       Impact factor: 3.162

9.  Forward design of a complex enzyme cascade reaction.

Authors:  Christoph Hold; Sonja Billerbeck; Sven Panke
Journal:  Nat Commun       Date:  2016-09-28       Impact factor: 14.919

Review 10.  Cell-Free Synthetic Glycobiology: Designing and Engineering Glycomolecules Outside of Living Cells.

Authors:  Thapakorn Jaroentomeechai; May N Taw; Mingji Li; Alicia Aquino; Ninad Agashe; Sean Chung; Michael C Jewett; Matthew P DeLisa
Journal:  Front Chem       Date:  2020-07-29       Impact factor: 5.221

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