Literature DB >> 31207555

A critical comparison of cellular and cell-free bioproduction systems.

Nico J Claassens1, Simon Burgener2, Bastian Vögeli2, Tobias J Erb3, Arren Bar-Even4.   

Abstract

Conversion of biological feedstocks into value-added chemicals is mostly performed via microbial fermentation. An emerging alternative approach is the use of cell-free systems, consisting of purified enzymes and cofactors. Unfortunately, the in vivo and in vitro research communities rarely interact, which leads to oversimplifications and exaggerations that do not permit fair comparison of the two strategies and impede synergistic interactions. Here, we provide a comprehensive account for the advantages and drawbacks associated with each strategy, and further discuss recent research efforts that aim to breach the limits of cellular and cell-free production. We also explore emerging hybrid solutions that integrate the benefits of both worlds and could expand the boundaries of biosynthesis.
Copyright © 2019 The Authors. Published by Elsevier Ltd.. All rights reserved.

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Year:  2019        PMID: 31207555      PMCID: PMC7610769          DOI: 10.1016/j.copbio.2019.05.003

Source DB:  PubMed          Journal:  Curr Opin Biotechnol        ISSN: 0958-1669            Impact factor:   9.740


  69 in total

1.  Catalytic Alkylation Using a Cyclic S-Adenosylmethionine Regeneration System.

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Journal:  Angew Chem Int Ed Engl       Date:  2017-02-07       Impact factor: 15.336

2.  Role of Biocatalysis in Sustainable Chemistry.

Authors:  Roger A Sheldon; John M Woodley
Journal:  Chem Rev       Date:  2017-09-06       Impact factor: 60.622

3.  Quantitative extraction and estimation of intracellular nicotinamide nucleotides of Escherichia coli.

Authors:  E M Lilius; V M Multanen; V Toivonen
Journal:  Anal Biochem       Date:  1979-10-15       Impact factor: 3.365

4.  Computational protein design enables a novel one-carbon assimilation pathway.

Authors:  Justin B Siegel; Amanda Lee Smith; Sean Poust; Adam J Wargacki; Arren Bar-Even; Catherine Louw; Betty W Shen; Christopher B Eiben; Huu M Tran; Elad Noor; Jasmine L Gallaher; Jacob Bale; Yasuo Yoshikuni; Michael H Gelb; Jay D Keasling; Barry L Stoddard; Mary E Lidstrom; David Baker
Journal:  Proc Natl Acad Sci U S A       Date:  2015-03-09       Impact factor: 11.205

Review 5.  Hydrophobicity and charge shape cellular metabolite concentrations.

Authors:  Arren Bar-Even; Elad Noor; Avi Flamholz; Joerg M Buescher; Ron Milo
Journal:  PLoS Comput Biol       Date:  2011-10-06       Impact factor: 4.475

6.  Methanol-essential growth of Escherichia coli.

Authors:  Fabian Meyer; Philipp Keller; Johannes Hartl; Olivier G Gröninger; Patrick Kiefer; Julia A Vorholt
Journal:  Nat Commun       Date:  2018-04-17       Impact factor: 14.919

Review 7.  Holistic bioengineering: rewiring central metabolism for enhanced bioproduction.

Authors:  Selçuk Aslan; Elad Noor; Arren Bar-Even
Journal:  Biochem J       Date:  2017-11-16       Impact factor: 3.857

8.  Pathway thermodynamics highlights kinetic obstacles in central metabolism.

Authors:  Elad Noor; Arren Bar-Even; Avi Flamholz; Ed Reznik; Wolfram Liebermeister; Ron Milo
Journal:  PLoS Comput Biol       Date:  2014-02-20       Impact factor: 4.475

9.  Statistical experimental design guided optimization of a one-pot biphasic multienzyme total synthesis of amorpha-4,11-diene.

Authors:  Xixian Chen; Congqiang Zhang; Ruiyang Zou; Kang Zhou; Gregory Stephanopoulos; Heng Phon Too
Journal:  PLoS One       Date:  2013-11-20       Impact factor: 3.240

10.  Alignment of microbial fitness with engineered product formation: obligatory coupling between acetate production and photoautotrophic growth.

Authors:  Wei Du; Joeri A Jongbloets; Coco van Boxtel; Hugo Pineda Hernández; David Lips; Brett G Oliver; Klaas J Hellingwerf; Filipe Branco Dos Santos
Journal:  Biotechnol Biofuels       Date:  2018-02-13       Impact factor: 6.040

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  11 in total

1.  Cell-Free Total Biosynthesis of Plant Terpene Natural Products using an Orthogonal Cofactor Regeneration System.

Authors:  Undramaa Bat-Erdene; John M Billingsley; William C Turner; Benjamin R Lichman; Francesca M Ippoliti; Neil K Garg; Sarah E O'Connor; Yi Tang
Journal:  ACS Catal       Date:  2021-07-23       Impact factor: 13.084

2.  Characterization of highly active 2-keto-3-deoxy-L-arabinonate and 2-keto-3-deoxy-D-xylonate dehydratases in terms of the biotransformation of hemicellulose sugars to chemicals.

Authors:  Samuel Sutiono; Bettina Siebers; Volker Sieber
Journal:  Appl Microbiol Biotechnol       Date:  2020-06-21       Impact factor: 4.813

3.  Minimal Pathway for the Regeneration of Redox Cofactors.

Authors:  Michele Partipilo; Eleanor J Ewins; Jacopo Frallicciardi; Tom Robinson; Bert Poolman; Dirk Jan Slotboom
Journal:  JACS Au       Date:  2021-11-12

Review 4.  Industrially Relevant Enzyme Cascades for Drug Synthesis and Their Ecological Assessment.

Authors:  Regine Siedentop; Katrin Rosenthal
Journal:  Int J Mol Sci       Date:  2022-03-25       Impact factor: 5.923

5.  Microbial engineering for the production of isobutanol: current status and future directions.

Authors:  Nair M Lakshmi; Parameswaran Binod; Raveendran Sindhu; Mukesh Kumar Awasthi; Ashok Pandey
Journal:  Bioengineered       Date:  2021-12       Impact factor: 3.269

Review 6.  Recent trends in biocatalysis.

Authors:  Dong Yi; Thomas Bayer; Christoffel P S Badenhorst; Shuke Wu; Mark Doerr; Matthias Höhne; Uwe T Bornscheuer
Journal:  Chem Soc Rev       Date:  2021-06-18       Impact factor: 60.615

7.  In Vivo Selection for Formate Dehydrogenases with High Efficiency and Specificity toward NADP.

Authors:  Liliana Calzadiaz-Ramirez; Carla Calvó-Tusell; Gabriele M M Stoffel; Steffen N Lindner; Sílvia Osuna; Tobias J Erb; Marc Garcia-Borràs; Arren Bar-Even; Carlos G Acevedo-Rocha
Journal:  ACS Catal       Date:  2020-06-08       Impact factor: 13.084

8.  MEMO: A Method for Computing Metabolic Modules for Cell-Free Production Systems.

Authors:  Axel von Kamp; Steffen Klamt
Journal:  ACS Synth Biol       Date:  2020-03-02       Impact factor: 5.110

Review 9.  Plant transporters involved in combating boron toxicity: beyond 3D structures.

Authors:  Maria Hrmova; Matthew Gilliham; Stephen D Tyerman
Journal:  Biochem Soc Trans       Date:  2020-08-28       Impact factor: 5.407

Review 10.  Biotechnology Applications of Cell-Free Expression Systems.

Authors:  August Brookwell; Javin P Oza; Filippo Caschera
Journal:  Life (Basel)       Date:  2021-12-08
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