Literature DB >> 27065234

A synthetic biochemistry module for production of bio-based chemicals from glucose.

Paul H Opgenorth1, Tyler P Korman1, James U Bowie1.   

Abstract

Synthetic biochemistry, the cell-free production of biologically based chemicals, is a potentially high-yield, flexible alternative to in vivo metabolic engineering. To limit costs, cell-free systems must be designed to operate continuously with minimal addition of feedstock chemicals. We describe a robust, efficient synthetic glucose breakdown pathway and implement it for the production of bioplastic. The system's performance suggests that synthetic biochemistry has the potential to become a viable industrial alternative.

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Year:  2016        PMID: 27065234     DOI: 10.1038/nchembio.2062

Source DB:  PubMed          Journal:  Nat Chem Biol        ISSN: 1552-4450            Impact factor:   15.040


  21 in total

Review 1.  Towards the engineering of in vitro systems.

Authors:  Christoph Hold; Sven Panke
Journal:  J R Soc Interface       Date:  2009-05-27       Impact factor: 4.118

2.  Production of biocommodities and bioelectricity by cell-free synthetic enzymatic pathway biotransformations: challenges and opportunities.

Authors:  Y-H Percival Zhang
Journal:  Biotechnol Bioeng       Date:  2010-03-01       Impact factor: 4.530

3.  Characterization of the D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase gene (xfp) from Bifidobacterium lactis.

Authors:  L Meile; L M Rohr; T A Geissmann; M Herensperger; M Teuber
Journal:  J Bacteriol       Date:  2001-05       Impact factor: 3.490

4.  In vitro reconstitution and steady-state analysis of the fatty acid synthase from Escherichia coli.

Authors:  Xingye Yu; Tiangang Liu; Fayin Zhu; Chaitan Khosla
Journal:  Proc Natl Acad Sci U S A       Date:  2011-10-31       Impact factor: 11.205

5.  Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research.

Authors:  Masanari Kitagawa; Takeshi Ara; Mohammad Arifuzzaman; Tomoko Ioka-Nakamichi; Eiji Inamoto; Hiromi Toyonaga; Hirotada Mori
Journal:  DNA Res       Date:  2006-01-09       Impact factor: 4.458

6.  Allosteric regulation of Lactobacillus plantarum xylulose 5-phosphate/fructose 6-phosphate phosphoketolase (Xfp).

Authors:  Katie Glenn; Kerry S Smith
Journal:  J Bacteriol       Date:  2015-01-20       Impact factor: 3.490

Review 7.  Bacterial synthesis of biodegradable polyhydroxyalkanoates.

Authors:  R A J Verlinden; D J Hill; M A Kenward; C D Williams; I Radecka
Journal:  J Appl Microbiol       Date:  2007-06       Impact factor: 3.772

8.  A synthetic biochemistry molecular purge valve module that maintains redox balance.

Authors:  Paul H Opgenorth; Tyler P Korman; James U Bowie
Journal:  Nat Commun       Date:  2014-06-17       Impact factor: 14.919

9.  Exploiting cell-free systems: Implementation and debugging of a system of biotransformations.

Authors:  Matthias Bujara; Michael Schümperli; Sonja Billerbeck; Matthias Heinemann; Sven Panke
Journal:  Biotechnol Bioeng       Date:  2010-06-15       Impact factor: 4.530

10.  Complete chemical synthesis, assembly, and cloning of a Mycoplasma genitalium genome.

Authors:  Daniel G Gibson; Gwynedd A Benders; Cynthia Andrews-Pfannkoch; Evgeniya A Denisova; Holly Baden-Tillson; Jayshree Zaveri; Timothy B Stockwell; Anushka Brownley; David W Thomas; Mikkel A Algire; Chuck Merryman; Lei Young; Vladimir N Noskov; John I Glass; J Craig Venter; Clyde A Hutchison; Hamilton O Smith
Journal:  Science       Date:  2008-01-24       Impact factor: 47.728

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  25 in total

1.  An ATP-free in vitro synthetic enzymatic biosystem facilitating one-pot stoichiometric conversion of starch to mannitol.

Authors:  Xinlei Wei; Qiangzi Li; Congcong Hu; Chun You
Journal:  Appl Microbiol Biotechnol       Date:  2021-02-05       Impact factor: 4.813

Review 2.  Microbial Cometabolism and Polyhydroxyalkanoate Co-polymers.

Authors:  Subhasree Ray; Vipin Chandra Kalia
Journal:  Indian J Microbiol       Date:  2016-09-28       Impact factor: 2.461

Review 3.  Synthetic metabolism: metabolic engineering meets enzyme design.

Authors:  Tobias J Erb; Patrik R Jones; Arren Bar-Even
Journal:  Curr Opin Chem Biol       Date:  2017-01-30       Impact factor: 8.822

Review 4.  Biomanufacturing: history and perspective.

Authors:  Yi-Heng Percival Zhang; Jibin Sun; Yanhe Ma
Journal:  J Ind Microbiol Biotechnol       Date:  2016-11-11       Impact factor: 3.346

Review 5.  A critical comparison of cellular and cell-free bioproduction systems.

Authors:  Nico J Claassens; Simon Burgener; Bastian Vögeli; Tobias J Erb; Arren Bar-Even
Journal:  Curr Opin Biotechnol       Date:  2019-06-14       Impact factor: 9.740

6.  A molecular rheostat maintains ATP levels to drive a synthetic biochemistry system.

Authors:  Paul H Opgenorth; Tyler P Korman; Liviu Iancu; James U Bowie
Journal:  Nat Chem Biol       Date:  2017-07-03       Impact factor: 15.040

7.  Co-utilization of Crude Glycerol and Biowastes for Producing Polyhydroxyalkanoates.

Authors:  Subhasree Ray; Rakesh Sharma; Vipin Chandra Kalia
Journal:  Indian J Microbiol       Date:  2017-12-27       Impact factor: 2.461

8.  An In Vitro Enzyme System for the Production of myo-Inositol from Starch.

Authors:  Tomoko Fujisawa; Shohei Fujinaga; Haruyuki Atomi
Journal:  Appl Environ Microbiol       Date:  2017-08-01       Impact factor: 4.792

9.  Cell-Free Protein Synthesis for High-Throughput Biosynthetic Pathway Prototyping.

Authors:  Blake J Rasor; Bastian Vögeli; Michael C Jewett; Ashty S Karim
Journal:  Methods Mol Biol       Date:  2022

10.  A synthetic pathway for the fixation of carbon dioxide in vitro.

Authors:  Thomas Schwander; Lennart Schada von Borzyskowski; Simon Burgener; Niña Socorro Cortina; Tobias J Erb
Journal:  Science       Date:  2016-11-18       Impact factor: 47.728

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