Literature DB >> 31453015

Automated segmentation of peripapillary retinal boundaries in OCT combining a convolutional neural network and a multi-weights graph search.

Pengxiao Zang1, Jie Wang1, Tristan T Hormel1, Liang Liu1, David Huang1, Yali Jia1.   

Abstract

Quantitative analysis of the peripapillary retinal layers and capillary plexuses from optical coherence tomography (OCT) and OCT angiography images depend on two segmentation tasks - delineating the boundary of the optic disc and delineating the boundaries between retinal layers. Here, we present a method combining a neural network and graph search to perform these two tasks. A comparison of this novel method's segmentation of the disc boundary showed good agreement with the ground truth, achieving an overall Dice similarity coefficient of 0.91 ± 0.04 in healthy and glaucomatous eyes. The absolute error of retinal layer boundaries segmentation in the same cases was 4.10 ± 1.25 µm.

Entities:  

Year:  2019        PMID: 31453015      PMCID: PMC6701529          DOI: 10.1364/BOE.10.004340

Source DB:  PubMed          Journal:  Biomed Opt Express        ISSN: 2156-7085            Impact factor:   3.732


  30 in total

1.  Influence of clinically invisible, but optical coherence tomography detected, optic disc margin anatomy on neuroretinal rim evaluation.

Authors:  Alexandre S C Reis; Neil O'Leary; Hongli Yang; Glen P Sharpe; Marcelo T Nicolela; Claude F Burgoyne; Balwantray C Chauhan
Journal:  Invest Ophthalmol Vis Sci       Date:  2012-04-18       Impact factor: 4.799

2.  Three dimensional optical angiography.

Authors:  Ruikang K Wang; Steven L Jacques; Zhenhe Ma; Sawan Hurst; Stephen R Hanson; Andras Gruber
Journal:  Opt Express       Date:  2007-04-02       Impact factor: 3.894

3.  Speckle variance detection of microvasculature using swept-source optical coherence tomography.

Authors:  Adrian Mariampillai; Beau A Standish; Eduardo H Moriyama; Mamta Khurana; Nigel R Munce; Michael K Leung; James Jiang; Alex Cable; Brian C Wilson; I Alex Vitkin; Victor X D Yang
Journal:  Opt Lett       Date:  2008-07-01       Impact factor: 3.776

4.  Optical coherence angiography.

Authors:  Shuichi Makita; Youngjoo Hong; Masahiro Yamanari; Toyohiko Yatagai; Yoshiaki Yasuno
Journal:  Opt Express       Date:  2006-08-21       Impact factor: 3.894

5.  Optical coherence tomography.

Authors:  D Huang; E A Swanson; C P Lin; J S Schuman; W G Stinson; W Chang; M R Hee; T Flotte; K Gregory; C A Puliafito
Journal:  Science       Date:  1991-11-22       Impact factor: 47.728

6.  Eigendecomposition-based clutter filtering technique for optical micro-angiography.

Authors:  Siavash Yousefi; Zhongwei Zhi; Ruikang K Wang
Journal:  IEEE Trans Biomed Eng       Date:  2011-05-12       Impact factor: 4.538

7.  Intraretinal layer segmentation of macular optical coherence tomography images using optimal 3-D graph search.

Authors:  Mona K Garvin; Michael D Abramoff; Randy Kardon; Stephen R Russell; Xiaodong Wu; Milan Sonka
Journal:  IEEE Trans Med Imaging       Date:  2008-10       Impact factor: 10.048

8.  Segmentation of the optic disc in 3-D OCT scans of the optic nerve head.

Authors:  Kyungmoo Lee; Meindert Niemeijer; Mona K Garvin; Young H Kwon; Milan Sonka; Michael D Abramoff
Journal:  IEEE Trans Med Imaging       Date:  2009-09-15       Impact factor: 10.048

9.  In vivo imaging of the microcirculation of the volar forearm using correlation mapping optical coherence tomography (cmOCT).

Authors:  Joey Enfield; Enock Jonathan; Martin Leahy
Journal:  Biomed Opt Express       Date:  2011-04-13       Impact factor: 3.732

10.  Split-spectrum amplitude-decorrelation angiography with optical coherence tomography.

Authors:  Yali Jia; Ou Tan; Jason Tokayer; Benjamin Potsaid; Yimin Wang; Jonathan J Liu; Martin F Kraus; Hrebesh Subhash; James G Fujimoto; Joachim Hornegger; David Huang
Journal:  Opt Express       Date:  2012-02-13       Impact factor: 3.894

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  5 in total

Review 1.  Artificial intelligence in OCT angiography.

Authors:  Tristan T Hormel; Thomas S Hwang; Steven T Bailey; David J Wilson; David Huang; Yali Jia
Journal:  Prog Retin Eye Res       Date:  2021-03-22       Impact factor: 21.198

2.  An Open-Source Deep Learning Network for Reconstruction of High-Resolution OCT Angiograms of Retinal Intermediate and Deep Capillary Plexuses.

Authors:  Min Gao; Tristan T Hormel; Jie Wang; Yukun Guo; Steven T Bailey; Thomas S Hwang; Yali Jia
Journal:  Transl Vis Sci Technol       Date:  2021-11-01       Impact factor: 3.283

Review 3.  Plexus-specific retinal vascular anatomy and pathologies as seen by projection-resolved optical coherence tomographic angiography.

Authors:  Tristan T Hormel; Yali Jia; Yifan Jian; Thomas S Hwang; Steven T Bailey; Mark E Pennesi; David J Wilson; John C Morrison; David Huang
Journal:  Prog Retin Eye Res       Date:  2020-07-24       Impact factor: 21.198

4.  DcardNet: Diabetic Retinopathy Classification at Multiple Levels Based on Structural and Angiographic Optical Coherence Tomography.

Authors:  Pengxiao Zang; Liqin Gao; Tristan T Hormel; Jie Wang; Qisheng You; Thomas S Hwang; Yali Jia
Journal:  IEEE Trans Biomed Eng       Date:  2021-05-21       Impact factor: 4.756

5.  Automated Segmentation of Retinal Fluid Volumes From Structural and Angiographic Optical Coherence Tomography Using Deep Learning.

Authors:  Yukun Guo; Tristan T Hormel; Honglian Xiong; Jie Wang; Thomas S Hwang; Yali Jia
Journal:  Transl Vis Sci Technol       Date:  2020-10-08       Impact factor: 3.283

  5 in total

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