Literature DB >> 28592654

Water is an active matrix of life for cell and molecular biology.

Philip Ball1.   

Abstract

Szent-Győrgi called water the "matrix of life" and claimed that there was no life without it. This statement is true, as far as we know, on our planet, but it is not clear whether it must hold throughout the cosmos. To evaluate that question requires a close consideration of the many varied and subtle roles that water plays in living cells-a consideration that must be free of both an assumed essentialism that gives water an almost mystical life-giving agency and a traditional tendency to see it as a merely passive solvent. Water is a participant in the "life of the cell," and here I describe some of the features of that active agency. Water's value for molecular biology comes from both the structural and dynamic characteristics of its status as a complex, structured liquid as well as its nature as a polar, protic, and amphoteric reagent. Any discussion of water as life's matrix must, however, begin with an acknowledgment that our understanding of it as both a liquid and a solvent is still incomplete.

Entities:  

Keywords:  hydration; hydrophobic effect; protein chemistry; solvation chemistry; water

Mesh:

Substances:

Year:  2017        PMID: 28592654      PMCID: PMC5754758          DOI: 10.1073/pnas.1703781114

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  78 in total

1.  A computational study of the closed and open states of the influenza a M2 proton channel.

Authors:  Yujie Wu; Gregory A Voth
Journal:  Biophys J       Date:  2005-07-22       Impact factor: 4.033

2.  The energy landscapes and motions of proteins.

Authors:  H Frauenfelder; S G Sligar; P G Wolynes
Journal:  Science       Date:  1991-12-13       Impact factor: 47.728

3.  A unified model of protein dynamics.

Authors:  Hans Frauenfelder; Guo Chen; Joel Berendzen; Paul W Fenimore; Helén Jansson; Benjamin H McMahon; Izabela R Stroe; Jan Swenson; Robert D Young
Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-27       Impact factor: 11.205

Review 4.  Water as a biomolecule.

Authors:  Philip Ball
Journal:  Chemphyschem       Date:  2008-12-22       Impact factor: 3.102

5.  Effects of cations on the hydrogen bond network of liquid water: new results from X-ray absorption spectroscopy of liquid microjets.

Authors:  Christopher D Cappa; Jared D Smith; Benjamin M Messer; Ronald C Cohen; Richard J Saykally
Journal:  J Phys Chem B       Date:  2006-03-23       Impact factor: 2.991

6.  Water dynamics and dewetting transitions in the small mechanosensitive channel MscS.

Authors:  Andriy Anishkin; Sergei Sukharev
Journal:  Biophys J       Date:  2004-05       Impact factor: 4.033

7.  Cell water dynamics on multiple time scales.

Authors:  Erik Persson; Bertil Halle
Journal:  Proc Natl Acad Sci U S A       Date:  2008-04-24       Impact factor: 11.205

8.  Structural and spectroscopic properties of water around small hydrophobic solutes.

Authors:  Maria Montagna; Fabio Sterpone; Leonardo Guidoni
Journal:  J Phys Chem B       Date:  2012-09-18       Impact factor: 2.991

9.  Experimental free energy surfaces reveal the mechanisms of maintenance of protein solubility.

Authors:  Alfonso De Simone; Anne Dhulesia; Gemma Soldi; Michele Vendruscolo; Shang-Te Danny Hsu; Fabrizio Chiti; Christopher M Dobson
Journal:  Proc Natl Acad Sci U S A       Date:  2011-12-12       Impact factor: 11.205

10.  Changes in hydration structure are necessary for collective motions of a multi-domain protein.

Authors:  Tomotaka Oroguchi; Masayoshi Nakasako
Journal:  Sci Rep       Date:  2016-05-19       Impact factor: 4.379

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  44 in total

1.  Multidomain Convergence of Argonaute during RISC Assembly Correlates with the Formation of Internal Water Clusters.

Authors:  Mi Seul Park; Raul Araya-Secchi; James A Brackbill; Hong-Duc Phan; Audrey C Kehling; Ekram W Abd El-Wahab; Daniel M Dayeh; Marcos Sotomayor; Kotaro Nakanishi
Journal:  Mol Cell       Date:  2019-07-16       Impact factor: 17.970

2.  Computational discovery of chemically patterned surfaces that effect unique hydration water dynamics.

Authors:  Jacob I Monroe; M Scott Shell
Journal:  Proc Natl Acad Sci U S A       Date:  2018-07-23       Impact factor: 11.205

3.  An order parameter without magic angle effect (OPTIMA) derived from R 1 ρ dispersion in ordered tissue.

Authors:  Yuxi Pang
Journal:  Magn Reson Med       Date:  2019-11-05       Impact factor: 4.668

4.  Liquid-liquid phase separation promotes animal desiccation tolerance.

Authors:  Clinton Belott; Brett Janis; Michael A Menze
Journal:  Proc Natl Acad Sci U S A       Date:  2020-10-19       Impact factor: 11.205

5.  Chemical physics of water.

Authors:  Pablo G Debenedetti; Michael L Klein
Journal:  Proc Natl Acad Sci U S A       Date:  2017-12-11       Impact factor: 11.205

6.  Ultrafast Dynamics of Water-Protein Coupled Motions around the Surface of Eye Crystallin.

Authors:  Patrick Houston; Nicolas Macro; Minhee Kang; Long Chen; Jin Yang; Lijuan Wang; Zhengrong Wu; Dongping Zhong
Journal:  J Am Chem Soc       Date:  2020-02-11       Impact factor: 15.419

Review 7.  Role of the Extremolytes Ectoine and Hydroxyectoine as Stress Protectants and Nutrients: Genetics, Phylogenomics, Biochemistry, and Structural Analysis.

Authors:  Laura Czech; Lucas Hermann; Nadine Stöveken; Alexandra A Richter; Astrid Höppner; Sander H J Smits; Johann Heider; Erhard Bremer
Journal:  Genes (Basel)       Date:  2018-03-22       Impact factor: 4.096

8.  Multivalent Proteins Rapidly and Reversibly Phase-Separate upon Osmotic Cell Volume Change.

Authors:  Ameya P Jalihal; Sethuramasundaram Pitchiaya; Lanbo Xiao; Pushpinder Bawa; Xia Jiang; Karan Bedi; Abhijit Parolia; Marcin Cieslik; Mats Ljungman; Arul M Chinnaiyan; Nils G Walter
Journal:  Mol Cell       Date:  2020-08-27       Impact factor: 17.970

Review 9.  Why Nature Chose Potassium.

Authors:  Antoine Danchin; Pablo Iván Nikel
Journal:  J Mol Evol       Date:  2019-10-28       Impact factor: 2.395

Review 10.  Characterization of the Features of Water Inside the SecY Translocon.

Authors:  Sara Capponi
Journal:  J Membr Biol       Date:  2021-04-03       Impact factor: 1.843

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